View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13682_low_4 (Length: 421)

Name: NF13682_low_4
Description: NF13682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13682_low_4
NF13682_low_4
[»] chr8 (3 HSPs)
chr8 (20-401)||(154586-154968)
chr8 (119-211)||(149671-149762)
chr8 (280-325)||(32236991-32237036)
[»] chr1 (2 HSPs)
chr1 (273-396)||(42312847-42312970)
chr1 (281-337)||(5450671-5450727)
[»] chr3 (2 HSPs)
chr3 (273-401)||(43790587-43790717)
chr3 (282-371)||(9107100-9107190)
[»] chr7 (3 HSPs)
chr7 (273-401)||(3412149-3412278)
chr7 (280-337)||(30275315-30275372)
chr7 (280-338)||(36683940-36683998)
[»] chr4 (3 HSPs)
chr4 (281-371)||(41668893-41668983)
chr4 (280-401)||(7372582-7372702)
chr4 (264-401)||(40303498-40303632)
[»] chr2 (2 HSPs)
chr2 (280-401)||(14902304-14902424)
chr2 (349-401)||(36184435-36184486)
[»] scaffold0027 (1 HSPs)
scaffold0027 (354-401)||(34521-34566)
[»] chr5 (1 HSPs)
chr5 (349-401)||(23127412-23127463)


Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 401
Target Start/End: Complemental strand, 154968 - 154586
Alignment:
Q  20 gaggtgggatgagattatatggatactacataaattgtatttttctatggaaagaaggaacatcccttgctctcaattgtatattgtaatcttcaattgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  154968 gaggtgggatgagattatatggatactacataaattgtatttttctatggaaagaaggaacatcccttgctctcaattgtatattgtaatcttcaattgt 154869  T
Q  120 atatgcaactcaattatcatcacctcttccttcactctccatattatgttgttcacatgcggtatggaattattgtgaagtagcatgagagcacatgctc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  154868 atatgcaactcaattatcatcacctcttccttcactctccatattatgttgttcacatgcggtatggaattattgtgaagtagcatgagagcacatgctc 154769  T
Q  220 attaggaatctatcccacgacggttt-tgagattttggtggtctagcctagaaagaacttgcaatttggatcctaactaataaatatatataatcatcaa 318  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  154768 attaggaatctatcccatgatggtttctgagattttggtggtctagcctagaaagaacttgcaatttggatcctaactaataaatatatataatcatcaa 154669  T
Q  319 acctgattcaaaaaactaaacaannnnnnnagggtctaatagacccctaaaaagaaattttgaggcccaaatttcgtacttat 401  Q
    |||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  154668 acctgattcaaaaaactaaacaatttttttagggtctaatagatccctaaaaagaaattttgaggcccaaatttcgtacttat 154586  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 149762 - 149671
Alignment:
Q  119 tatatgcaactcaattatcatcacctcttccttcactctccatattatgttgttcacatgcggtatggaattattgtgaagtagcatgagagc 211  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  149762 tatatgcaa-tcaattatcatcacctcttccttcactctccatattatgttgttcacatgaggtatggaattattgtgaagtggcatgagagc 149671  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 32237036 - 32236991
Alignment:
Q  280 caatttggatcctaactaataaatatatataatcatcaaacctgat 325  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||    
T  32237036 caatttgggtcctaactaataaatatatataaacatcaaacttgat 32236991  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 396
Target Start/End: Complemental strand, 42312970 - 42312847
Alignment:
Q  273 gaacttgcaatttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaaacaannnnnnnagggtctaatagacccctaaaaag 372  Q
    |||| ||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||       ||||  |||||||||| ||||||     
T  42312970 gaacctgcaatttggatcctgactaataaatatatataaacatcaaatctgattcaaaaaactaaacaatttttttagggcttaatagacccttaaaaat 42312871  T
Q  373 aaattttgaggcccaaatttcgta 396  Q
    |||||||| |||||||||||||||    
T  42312870 aaattttggggcccaaatttcgta 42312847  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 5450671 - 5450727
Alignment:
Q  281 aatttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaa 337  Q
    |||||||||| |||||||||||||||||||| |||||||| |||| |||| ||||||    
T  5450671 aatttggatcataactaataaatatatataaacatcaaacttgatacaaagaactaa 5450727  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 401
Target Start/End: Complemental strand, 43790717 - 43790587
Alignment:
Q  273 gaacttgcaatttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaaacaannnnnnnagggtct--aatagacccctaaaa 370  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||  |||| |||||||||||||||       |||||||   ||||||||||||||    
T  43790717 gaacttacaatttgggtcctaactaataaatatatataaacatcaaatttgatacaaaaaactaaacaattttcttagggtctgatatagacccctaaaa 43790618  T
Q  371 agaaattttgaggcccaaatttcgtacttat 401  Q
    |  | ||| |||||| ||||||| |||||||    
T  43790617 aatattttggaggcctaaatttcctacttat 43790587  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 371
Target Start/End: Original strand, 9107100 - 9107190
Alignment:
Q  282 atttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaaacaa-nnnnnnnagggtctaatagacccctaaaaa 371  Q
    ||||||||| |||||||||||||||||||| |||||||   ||| |||||||||||||||        |||||||||||||||||||||||    
T  9107100 atttggatcataactaataaatatatataaacatcaaattcgatacaaaaaactaaacaactttttttagggtctaatagacccctaaaaa 9107190  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 401
Target Start/End: Original strand, 3412149 - 3412278
Alignment:
Q  273 gaacttgcaatttggatcctaactaataaatatatataatcatcaaacctgattc--aaaaaactaaacaannnnnnnagggtctaatagacccctaaaa 370  Q
    |||| |||||||||| | ||||| ||||||||||||||| ||||||||||||| |  ||||||||||||||       || | ||| |||||||||||||    
T  3412149 gaacctgcaatttgggttctaacaaataaatatatataaacatcaaacctgatacaaaaaaaactaaacaa-ttttttagtgcctattagacccctaaaa 3412247  T
Q  371 agaaattttgaggcccaaatttcgtacttat 401  Q
    |||||||||| ||||||||||  ||||||||    
T  3412248 agaaattttggggcccaaattctgtacttat 3412278  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 30275315 - 30275372
Alignment:
Q  280 caatttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaa 337  Q
    |||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||    
T  30275315 caatttggattctaactaataaatatatataaacatcaaacttgatacaaaaaactaa 30275372  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 338
Target Start/End: Original strand, 36683940 - 36683998
Alignment:
Q  280 caatttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaaa 338  Q
    |||||||| ||||||||||||||| |||||||  ||||||| |||| ||||||||||||    
T  36683940 caatttgggtcctaactaataaatttatataaatatcaaacttgatacaaaaaactaaa 36683998  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 371
Target Start/End: Original strand, 41668893 - 41668983
Alignment:
Q  281 aatttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaaacaannnnnnnagggtctaatagacccctaaaaa 371  Q
    ||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||| |||       |||| ||||||||||||||||||    
T  41668893 aatttgggtcctaactaataaatatatataaacatcaaacttgatacaaaaaactaagcaatttttttagggcctaatagacccctaaaaa 41668983  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 401
Target Start/End: Complemental strand, 7372702 - 7372582
Alignment:
Q  280 caatttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaaacaannnnnnnagggtctaatagacccctaaaaagaaatttt 379  Q
    ||||||||||| |||||||||||||||||||| |||||||  |||| ||||||||||| |||       |||| |||||| |||| |||| | ||||||     
T  7372702 caatttggatcttaactaataaatatatataaacatcaaatttgatacaaaaaactaagcaatttttttagggcctaatatacccttaaata-aaatttg 7372604  T
Q  380 gaggcccaaatttcgtacttat 401  Q
    | ||||||||||| ||||||||    
T  7372603 ggggcccaaattttgtacttat 7372582  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 401
Target Start/End: Original strand, 40303498 - 40303632
Alignment:
Q  264 gcctagaaagaacttgcaatttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaaacaannnnnnnagggtctaatagacc 363  Q
    |||||||  |||||| ||||||||| ||||||||||||||||||||||  |  |||| |||| | ||||| ||||  |       | |||||||||||||    
T  40303498 gcctagagtgaacttacaatttggaccctaactaataaatatatataaaaacgaaacttgatac-aaaaagtaaagcaattttttacggtctaatagacc 40303596  T
Q  364 cctaaaaagaaattttgaggcccaaatttcgtacttat 401  Q
    |||||||  ||| |||||| ||||||||||||||||||    
T  40303597 cctaaaa--aaaatttgagacccaaatttcgtacttat 40303632  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 401
Target Start/End: Original strand, 14902304 - 14902424
Alignment:
Q  280 caatttggatcctaactaataaatatatataatcatcaaacctgattcaaaaaactaaacaannnnnnnagggtctaatagacccctaaaaagaaatttt 379  Q
    |||||||| ||||||||||||||||||||||| |||||||  |||| | ||||||||| |||       ||||||||||||||||||||||  ||| |||    
T  14902304 caatttgggtcctaactaataaatatatataaacatcaaatttgatac-aaaaactaagcaattttgttagggtctaatagacccctaaaagaaaaattt 14902402  T
Q  380 gaggcccaaatttcgtacttat 401  Q
    |  |||||||| ||||| ||||    
T  14902403 ggagcccaaatatcgtaattat 14902424  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 36184435 - 36184486
Alignment:
Q  349 agggtctaatagacccctaaaaagaaattttgaggcccaaatttcgtacttat 401  Q
    ||||| ||||||||||||||||| |||||| |||| |||||||| ||||||||    
T  36184435 agggtttaatagacccctaaaaa-aaatttggaggtccaaattttgtacttat 36184486  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 34521 - 34566
Alignment:
Q  354 ctaatagacccctaaaaagaaattttgaggcccaaatttcgtacttat 401  Q
    |||||| ||||||||||||||||||   ||||||||||||||||||||    
T  34521 ctaataaacccctaaaaagaaattt--gggcccaaatttcgtacttat 34566  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 23127412 - 23127463
Alignment:
Q  349 agggtctaatagacccctaaaaagaaattttgaggcccaaatttcgtacttat 401  Q
    ||||||||||||||||||||||| | ||| || || |||||||||||||||||    
T  23127412 agggtctaatagacccctaaaaaaatattgtg-ggtccaaatttcgtacttat 23127463  T

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