View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13683_high_1 (Length: 487)
Name: NF13683_high_1
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 57 - 403
Target Start/End: Original strand, 40079052 - 40079398
Alignment:
| Q |
57 |
catgtttaatcatgttattttgaagaagaaaaaaccaacttttcattgttgggcaagaatataacaaaagattgacaaaatacatgtctaattgtaacat |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079052 |
catgtttaatcatgttattttgaagaagaagaaaccaacttttcattgttgggcaagaatataacaaaagattgacaaaatacatgtctaattgtaacat |
40079151 |
T |
|
| Q |
157 |
aacaattatttatcagttatttaagnnnnnnngttctattctatataggtgctataactcccactttatgtgcataccgttaccaatttttcacgcattt |
256 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079152 |
aacaattatttatcagttatttaagtttttttgttctattctatataggtgctttaactcccattttatgtgcataccgttaccaatttttcacgcattt |
40079251 |
T |
|
| Q |
257 |
cgttataaaaatatgcatgtgtttgttatgttgttgacgttgcaggaacgaagtttgctgctaaccttaattacatgtatccatttccatctcttatgtg |
356 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079252 |
cgtaataaaaatatgcatgtgtttgttatgttgttgacgttgcaggaacgaagtttgctgctaaccttaattacatgtatccatttccatctcttatgtg |
40079351 |
T |
|
| Q |
357 |
tacctcttgtctatctcaaaaggaaatgtttgatgcacacaacatat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40079352 |
tacctcttgtctatctcaaaaggaaatgtttgatgtacacaacatat |
40079398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 487
Target Start/End: Original strand, 40079418 - 40079460
Alignment:
| Q |
445 |
agaagatttgtagagataaatgaagtgtcgaatgagtgttagg |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40079418 |
agaagatttgtagagataaatgaagtgtcgaatgagtgttagg |
40079460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 40079001 - 40079032
Alignment:
| Q |
15 |
caaaggccaataatataccacatatttttgtg |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40079001 |
caaaggccaataatataccacatatttttgtg |
40079032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University