View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13683_high_12 (Length: 374)
Name: NF13683_high_12
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 354
Target Start/End: Original strand, 7739234 - 7739581
Alignment:
| Q |
7 |
tcgaagaatatcaaggtgcaaagcagggaaaatcacaaaatccaaataagctcaatacagaacaatgcagtaatgaaacagaatcttgcacaaaagtttt |
106 |
Q |
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| T |
7739234 |
tcgaataaaatcaaggtgcaaagcagggaaaatcacaaaatccaaataagctcaatacagaacaatgcagtaatgaaacagaatcttgcacaaaagtttt |
7739333 |
T |
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| Q |
107 |
ctgaatcacacagagcacagaaaaaagtggatgtgaaaacttttgctgttaaaacctaagacacaatctccaaaagacaatatcaataagcccaacaaga |
206 |
Q |
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| T |
7739334 |
ctgaatcacacagagcacagaaaaaagtggatgtgaaaacttttgctgttaaaacctaagacacaatctccaaaagacaatatcaataagcccaacaaga |
7739433 |
T |
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| Q |
207 |
acaagcaaacagaccacaaatggaaatctggtactatactttctccacaaaaagttaagttggtgtaagaatgtgttagcttttatcatccttgttaaaa |
306 |
Q |
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| T |
7739434 |
ataagcaaacagaccacaaatggaaatctggtactatactttctccacaaaaagttaagttggtgaaagaatgtgttagcttttatcatccttgttaaaa |
7739533 |
T |
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| Q |
307 |
accaatttccacccaatgttgaatatcttagattcccacaaaaacaaa |
354 |
Q |
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| T |
7739534 |
accaatttccacccaatgttgaatatcttagattcccacaaaaacaaa |
7739581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Original strand, 7739584 - 7739614
Alignment:
| Q |
344 |
acaaaaacaaatcaaaactttacaaggtagc |
374 |
Q |
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| T |
7739584 |
acaaaaacaaatcaaaactttacaaggtagc |
7739614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 38047508 - 38047744
Alignment:
| Q |
16 |
atcaaggtgcaaagcagggaaaatcacaaaatccaaataagctcaatacagaacaatgcagtaatgaaacagaatcttgcacaaaagttttctgaatcac |
115 |
Q |
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| T |
38047508 |
atcaaagtgcaaagcagagaaaatcataaaatc-aaataagctcaatgcagaaagattcaggaatggaacagaatcttgcacaaaaatcatctgaatcac |
38047606 |
T |
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| Q |
116 |
acagagcacagaaaaaagtggatgtgaaaacttttgctgttaaaacctaagacacaatctccaaaagacaatatcaataagcccaacaagaacaagcaaa |
215 |
Q |
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| T |
38047607 |
acgggggacaggaaaaagtggaagtgaaaacttttgctgttaaaacctaaaacacaatctccaaaagacaacat---------caaaaagaacaagcaaa |
38047697 |
T |
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| Q |
216 |
cagaccacaaatggaaatctggtactatactttctccacaaaaagtt |
262 |
Q |
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| T |
38047698 |
cagaccacaaatggaaaattggtactatattttctccacaaaaagtt |
38047744 |
T |
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