View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13683_high_13 (Length: 361)
Name: NF13683_high_13
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_high_13 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 235 - 361
Target Start/End: Original strand, 20023818 - 20023944
Alignment:
| Q |
235 |
aatgttatactcacaatgcatagaaatttatctcatacaattatatccaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa |
334 |
Q |
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| T |
20023818 |
aatgttatactcacaatgcatagaaatttatctcatacaattatattcaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa |
20023917 |
T |
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| Q |
335 |
caaggaatgaatagtgagagtgatatg |
361 |
Q |
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| T |
20023918 |
caaggaatgaatagtgcgagtgatatg |
20023944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 235 - 360
Target Start/End: Original strand, 18764384 - 18764509
Alignment:
| Q |
235 |
aatgttatactcacaatgcatagaaatttatctcatacaattatatccaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa |
334 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18764384 |
aatgttatactcacaatgcatagaaatttatctcatataattatatccaatttcaaatatatcttcaaattttaaaaagtttaggcatgctttaaatgat |
18764483 |
T |
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| Q |
335 |
caaggaatgaatagtgagagtgatat |
360 |
Q |
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| T |
18764484 |
caaggaatcaatagtgagagtgatat |
18764509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 20023290 - 20023356
Alignment:
| Q |
122 |
gcttcaaatacttatttgttctactagaaaatggtcgttgttcgcagaaggaaggggtacactattc |
188 |
Q |
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| T |
20023290 |
gcttcaaatatttatttgttctactagaaaatggtcgttgttcgcagaaggaaggagtacactattc |
20023356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 20023268 - 20023305
Alignment:
| Q |
189 |
attgtttgtttatatatatcatgcttcaaatacttatt |
226 |
Q |
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| T |
20023268 |
attgattgtttatatatatcatgcttcaaatatttatt |
20023305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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