View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13683_high_15 (Length: 355)
Name: NF13683_high_15
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 28 - 355
Target Start/End: Original strand, 2318937 - 2319264
Alignment:
| Q |
28 |
cagaaatttcatcaaaagcaaatgtaattcgaaacaacaataaatgacatatatattgattagattcgaaacataaagacagacaaacaacataacaatc |
127 |
Q |
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| T |
2318937 |
cagaaatttcatcgaaagcaaatgtaattcgaaacaacaataaatgacatatatattgattagattcgaaacataaagacagacaaacaacataagaatc |
2319036 |
T |
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| Q |
128 |
tgatcttgatagaaaaagaggaagagttaattaattaattaagaaatgaagtatacttgaacttgaggggattcatcagaaggattgtttgtggcggcat |
227 |
Q |
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| T |
2319037 |
tgatcttgatagaaaaagaggaagagttaattaattaattaagaaatgaagtatacttgaacttgaggggattcatcagaaggattgtttgtggcggcat |
2319136 |
T |
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| Q |
228 |
tgatagtggagagagaagaagaaatgttattgatcttcgaagcttctggagaatccatcaagaactgtttcacactcacactcgatccagtcgatttccc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2319137 |
tgatagtggagagagaagaagaaatgttattgatcttcgaagcttctggagaatccatcaagaactgtttcacactcacactcgatccagtcgatttccc |
2319236 |
T |
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| Q |
328 |
tataacttcttcttcttctatctatctc |
355 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2319237 |
tataacttcttcttcttctatctatctc |
2319264 |
T |
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