View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13683_high_18 (Length: 346)
Name: NF13683_high_18
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_high_18 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 340
Target Start/End: Original strand, 499384 - 499722
Alignment:
| Q |
2 |
taaagaagttcctcgatggtcatacgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaa |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
499384 |
taaacaagttcctcgatggtcatacgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccgcaaaagccgaa |
499483 |
T |
|
| Q |
102 |
cgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
499484 |
cgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaat |
499583 |
T |
|
| Q |
202 |
tttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
499584 |
tttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttc |
499683 |
T |
|
| Q |
302 |
tcaaggaaatggacagccccattcccccatattattgga |
340 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
499684 |
tcaaggaaatgcacagccccattcccccatttttttgga |
499722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 2 - 340
Target Start/End: Original strand, 6924132 - 6924470
Alignment:
| Q |
2 |
taaagaagttcctcgatggtcatacgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaa |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
6924132 |
taaacaagttcctcgatggtcatacgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccgcaaaagccgaa |
6924231 |
T |
|
| Q |
102 |
cgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
6924232 |
cgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcttgaagtggacttaaatcacgaat |
6924331 |
T |
|
| Q |
202 |
tttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6924332 |
tttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttc |
6924431 |
T |
|
| Q |
302 |
tcaaggaaatggacagccccattcccccatattattgga |
340 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
6924432 |
tcaaggaaatgcacagccccattcccccatttttttgga |
6924470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 27529042 - 27529201
Alignment:
| Q |
2 |
taaagaagttcctcgatggtcatacgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaa |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||||||||| || || |
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|
| T |
27529042 |
taaacaagttcctcgatggtcatacgagttaatcgacgaattggagcaagtgacgaaaagaataataaaagaggctcagattcgttccccaattaccaaa |
27529141 |
T |
|
| Q |
102 |
cgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaat |
161 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| | ||||||| ||| ||||| |||| |
|
|
| T |
27529142 |
cgtatagtaatttttaatgggaatacaagttcactaaatttgaatcttgatcctaaaaat |
27529201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 36988804 - 36988745
Alignment:
| Q |
2 |
taaagaagttcctcgatggtcatacgagttaatcgacgaattggagcaaatgacggaaag |
61 |
Q |
| |
|
|||| ||||||||| |||||||||| | ||||||||||||||||||||| ||| |||||| |
|
|
| T |
36988804 |
taaacaagttcctcaatggtcatacaacttaatcgacgaattggagcaagtgatggaaag |
36988745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 2 - 330
Target Start/End: Original strand, 30831556 - 30831884
Alignment:
| Q |
2 |
taaagaagttcctcgatggtcatacgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaa |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
30831556 |
taaacaagttcctcgatggtcatacgagttaatcgacgaattagagcaagtgacgaaaagactaacaaaagagactcagattcgttccccagaagccgaa |
30831655 |
T |
|
| Q |
102 |
cgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaat |
201 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
30831656 |
cgtatggtaatatttaataggaatacagattcactgactttgaatcttggtcctagaaatgacaatgatgctattcctgaactggacctgaatcacgaat |
30831755 |
T |
|
| Q |
202 |
tttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactttc |
301 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30831756 |
tttttctactaaattttttacgtgaatcagattatgaccgagatataattaagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaacttgt |
30831855 |
T |
|
| Q |
302 |
tcaaggaaatggacagccccattccccca |
330 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |
|
|
| T |
30831856 |
tcaaggaactggacaggcccattccccca |
30831884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 47460500 - 47460370
Alignment:
| Q |
119 |
tgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaatttt |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47460500 |
tgggaatacagagtcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaatttt |
47460401 |
T |
|
| Q |
219 |
ttacgcgaaccagattttgatcgagatataa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47460400 |
ttacgcgaaccagattttgatcgagatataa |
47460370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 204
Target Start/End: Complemental strand, 28384302 - 28384101
Alignment:
| Q |
2 |
taaagaagttcctcgatggtcatacgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaa |
101 |
Q |
| |
|
|||| ||||| ||| |||||||||| | ||||| || ||| |||||||| ||||||||||| || |||||||| ||| ||||||| || | ||||||| |
|
|
| T |
28384302 |
taaacaagtttctcaatggtcatacaacttaatagatgaaatggagcaagtgacggaaagattatcaaaagaggctcaaattcgtttcctacgagccgaa |
28384203 |
T |
|
| Q |
102 |
cgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaat |
201 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28384202 |
cgtatagtaatttttaataggaatacagattcactaactttgaatcttggtcctag-aatgacaatgacgctattcctgaactggacctaaatcacgaat |
28384104 |
T |
|
| Q |
202 |
ttt |
204 |
Q |
| |
|
||| |
|
|
| T |
28384103 |
ttt |
28384101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 11299504 - 11299457
Alignment:
| Q |
252 |
aagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactt |
299 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
11299504 |
aagggatctatgcaccctctaaggcgtaaaataacgacttcgaaactt |
11299457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 47448317 - 47448189
Alignment:
| Q |
2 |
taaagaagttcctcgatggtcatacgagttaatcgacgaattggagcaaatgacggaaagactaacaaaagagtttcagattcgttccccaaaagccgaa |
101 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
47448317 |
taaacaagttccttgatggtcatacgagttaatcgacaaattggagcaagtgacagaaagactaacaaaagaggctcagattcgttccccaaaagccaaa |
47448218 |
T |
|
| Q |
102 |
cgtatggtaatttttaatgggaatacagattcactgac |
139 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
47448217 |
cg---------ttttaatgggaatacagattcactgac |
47448189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 200 - 330
Target Start/End: Complemental strand, 2912956 - 2912825
Alignment:
| Q |
200 |
attttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgt-aaaatagcgacaacgaaact |
298 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| |||||| |||| |||||| |
|
|
| T |
2912956 |
attttttcaattaaattttttacgcgaaccagattatgaccgagatataattaagggatctatgcaccctctaagtcgtaaaaataacgactttgaaact |
2912857 |
T |
|
| Q |
299 |
ttctcaaggaaatggacagccccattccccca |
330 |
Q |
| |
|
| |||||||| |||||| |||||||||||| |
|
|
| T |
2912856 |
tgttcaaggaactggacattcccattccccca |
2912825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 17260283 - 17260328
Alignment:
| Q |
2 |
taaagaagttcctcgatggtcatacgagttaatcgacgaattggag |
47 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17260283 |
taaacaagttcctcgatggtcatacgagttaatcgacgaattggag |
17260328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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