View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13683_high_20 (Length: 332)
Name: NF13683_high_20
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 1792313 - 1792011
Alignment:
| Q |
1 |
aatattaaggggataaggaacactaatgatacatcaatagcaacaataatacagcgacatttaaaatgccagtaaacctacgaatcaaatattgaaataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792313 |
aatattaaggggataaggaacactaatgatacatcaatagcaacaataatacagcgacatttaaaatgccagtaaacctacgaatcaaatattgaaataa |
1792214 |
T |
|
| Q |
101 |
ctacgggtaatcagactgctgatcaatgttgtcattagcagctacagcatcggtacagcactatgtcaaagcagaatttgaacaaatcgctattgttttg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1792213 |
ctacgggtaatcagactgctgatcaatgttgtcattagcagctacagcatcggtacagcactatgtcaaagcagaatttgaacaaatcgctattgttttg |
1792114 |
T |
|
| Q |
201 |
cgattagtacataatattgtgaaatgggtgtaatttaaacaaatcgctattttccacgatccacgagtgacaatgcttctgctaatgtagttaatgacaa |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1792113 |
cgattagtacataatattttgaaatgggtgtaatttaaacaaatcgctattttccacgatccacgattgacaatgcttctgctaatgtagttaatgacaa |
1792014 |
T |
|
| Q |
301 |
aag |
303 |
Q |
| |
|
||| |
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|
| T |
1792013 |
aag |
1792011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 37538416 - 37538448
Alignment:
| Q |
170 |
agcagaatttgaacaaatcgctattgttttgcg |
202 |
Q |
| |
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| T |
37538416 |
agcagaatttgaacaaatcgctattgttttgcg |
37538448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 2732936 - 2732965
Alignment:
| Q |
175 |
aatttgaacaaatcgctattgttttgcgat |
204 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
2732936 |
aatttgaacaaatcgctattgttttgcgat |
2732965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 33390686 - 33390657
Alignment:
| Q |
170 |
agcagaatttgaacaaatcgctattgtttt |
199 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33390686 |
agcagaatttgaacaaatcgctattgtttt |
33390657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 28804331 - 28804359
Alignment:
| Q |
170 |
agcagaatttgaacaaatcgctattgttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
28804331 |
agcagaatttgaacaaatcgctattgttt |
28804359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 33044032 - 33044004
Alignment:
| Q |
170 |
agcagaatttgaacaaatcgctattgttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
33044032 |
agcagaatttgaacaaatcgctattgttt |
33044004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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