View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13683_high_4 (Length: 632)

Name: NF13683_high_4
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13683_high_4
NF13683_high_4
[»] chr4 (8 HSPs)
chr4 (219-597)||(18343719-18344099)
chr4 (1-211)||(18343475-18343685)
chr4 (428-558)||(36638870-36639000)
chr4 (131-180)||(506506-506555)
chr4 (131-180)||(18042075-18042124)
chr4 (49-204)||(50593542-50593696)
chr4 (143-181)||(18179696-18179734)
chr4 (343-377)||(36639056-36639090)
[»] scaffold0002 (5 HSPs)
scaffold0002 (254-597)||(163237-163589)
scaffold0002 (1-211)||(163684-163894)
scaffold0002 (53-187)||(278246-278382)
scaffold0002 (140-182)||(190645-190687)
scaffold0002 (219-254)||(163610-163645)
[»] chr1 (3 HSPs)
chr1 (281-588)||(9857643-9857946)
chr1 (143-181)||(31265991-31266029)
chr1 (144-180)||(49771361-49771397)
[»] scaffold0702 (1 HSPs)
scaffold0702 (1-119)||(6873-6991)
[»] chr8 (1 HSPs)
chr8 (1-119)||(35194958-35195076)
[»] scaffold1779 (1 HSPs)
scaffold1779 (1-186)||(48-233)
[»] chr3 (4 HSPs)
chr3 (91-192)||(54630176-54630277)
chr3 (131-180)||(17223707-17223756)
chr3 (141-182)||(13226970-13227011)
chr3 (428-476)||(31878210-31878258)
[»] chr6 (4 HSPs)
chr6 (158-211)||(31058812-31058865)
chr6 (131-180)||(14543003-14543052)
chr6 (219-268)||(31058724-31058773)
chr6 (143-181)||(4639385-4639423)
[»] scaffold0008 (1 HSPs)
scaffold0008 (131-180)||(265168-265217)
[»] chr7 (4 HSPs)
chr7 (131-180)||(6930438-6930487)
chr7 (141-182)||(1399882-1399923)
chr7 (141-182)||(18961072-18961112)
chr7 (141-182)||(18993033-18993073)
[»] chr5 (1 HSPs)
chr5 (131-180)||(19153780-19153829)
[»] scaffold0625 (1 HSPs)
scaffold0625 (141-182)||(8623-8664)
[»] scaffold0330 (2 HSPs)
scaffold0330 (254-299)||(13433-13478)
scaffold0330 (219-254)||(13377-13412)
[»] chr2 (1 HSPs)
chr2 (131-179)||(17442387-17442435)
[»] scaffold0477 (1 HSPs)
scaffold0477 (143-181)||(8693-8731)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-172; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 219 - 597
Target Start/End: Original strand, 18343719 - 18344099
Alignment:
Q  219 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccttttttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18343719 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccatttttg 18343818  T
Q  319 ctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctcnnnnnnnnnn--attatcatattggcaaaaatttctaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            ||||||||||||||||||||||||||    
T  18343819 ctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttgtcttttttttttttattatcatattggcaaaaatttctaa 18343918  T
Q  417 attcnnnnnnntccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatga 516  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343919 attcaaaaaaatccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatga 18344018  T
Q  517 attcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc 597  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18344019 attcttagttccgtccgccatcccatctaatgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc 18344099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 18343475 - 18343685
Alignment:
Q  1 caagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttctttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343475 caagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttctttt 18343574  T
Q  101 ggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaataaatcgattcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343575 ggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaataaatcgattcaaa 18343674  T
Q  201 aatatttaacc 211  Q
    |||||||||||    
T  18343675 aatatttaacc 18343685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 428 - 558
Target Start/End: Complemental strand, 36639000 - 36638870
Alignment:
Q  428 tccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc 527  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36639000 tccacattttcgcgggcgaatattcactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttc 36638901  T
Q  528 cgtccgccatcccatctaacgaatcagtaag 558  Q
    ||||||||||||||||||| |||| ||||||    
T  36638900 cgtccgccatcccatctaatgaattagtaag 36638870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 506555 - 506506
Alignment:
Q  131 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  506555 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 506506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 18042075 - 18042124
Alignment:
Q  131 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18042075 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 18042124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 50593696 - 50593542
Alignment:
Q  49 aggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatggttatttctcaattccatctctattacagaac 148  Q
    ||||||||| ||| ||| ||||| |||||||||||  | |||||||||||| ||||||||||||  ||||| ||| ||||||| |||||||||||| |||    
T  50593696 aggcttttcttttaatttttccttgatgttgtttattggatctggttctttgggggttatagttagtggttgtttatcaattctatctctattaca-aac 50593598  T
Q  149 cgtacatgagattttcacctcatacggctcctcgcgaataaatcgattcaaaaata 204  Q
     | || | ||||||||  |||| ||||||| ||| | ||||||||||  |||||||    
T  50593597 tgcacgttagattttcgtctcacacggctcatcgtgcataaatcgatcaaaaaata 50593542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 18179696 - 18179734
Alignment:
Q  143 cagaaccgtacatgagattttcacctcatacggctcctc 181  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  18179696 cagaaccgtacgtgagattttcatctcatacggctcctc 18179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 36639090 - 36639056
Alignment:
Q  343 ttgttttgatataaggttctaacgaatccatattt 377  Q
    |||||||||||||| ||||||||||||||||||||    
T  36639090 ttgttttgatataatgttctaacgaatccatattt 36639056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 254 - 597
Target Start/End: Complemental strand, 163589 - 163237
Alignment:
Q  254 tattagaaatttgtatatcttgctttgatatagaaccaaatatggattcttatagaccttttttgctatccatatctaactagataatgttgttttgata 353  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  163589 tattagaaatttgtatatcttgcttggatataaaaccaaatatggatttttatagaccatttttgctatccatatctaactagataatgttgttttgata 163490  T
Q  354 taaggttctaacgaatccatatttctcnnnnnnnnnn---attatcatat----tggcaaaaatttctaaattcnnnnnnn-tccacattttcgcgggcg 445  Q
    |||||||||||||||||||||||| ||             ||||||||||    |||||||||||||||||||         ||||||||||||||||||    
T  163489 taaggttctaacgaatccatatttgtctttttttttttttattatcatatatattggcaaaaatttctaaattaaaaaaaaatccacattttcgcgggcg 163390  T
Q  446 aatattt-actctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatct 544  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  163389 aatattttactctttcattataaatttaagatgtgatgttggattagtccacaactcctcaaaaaataatgaattcttagttccgtccaccatcccatct 163290  T
Q  545 aacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc 597  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  163289 aatgaatcagtaagattatgaaatttaatataatcttaagtattcacaagttc 163237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 163894 - 163684
Alignment:
Q  1 caagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttctttt 100  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  163894 caagtgcctaaagaacatatttttcgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttgcggaatctggttctttt 163795  T
Q  101 ggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaataaatcgattcaaa 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  163794 ggggttatagttgatagttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaataaatcgattcaaa 163695  T
Q  201 aatatttaacc 211  Q
    |||||||||||    
T  163694 aatatttaacc 163684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 278246 - 278382
Alignment:
Q  53 ttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatggt--tatttctcaattccatctctattacagaaccg 150  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||||  | ||||| | ||||||||||| | || ||| |    
T  278246 ttttcctttcattcttcctctatgttgtttgcgaaatctggttcttttggggttatagtcgatggttctctttcttagttccatctctactccaaaactg 278345  T
Q  151 tacatgagattttcacctcatacggctcctcgcgaat 187  Q
     |||||||| ||||  ||||| | |||||||||||||    
T  278346 gacatgagagtttcttctcatccagctcctcgcgaat 278382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 190687 - 190645
Alignment:
Q  140 ttacagaaccgtacatgagattttcacctcatacggctcctcg 182  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  190687 ttacagaaccgtacatgagattttcacctcatacggctcctcg 190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 163645 - 163610
Alignment:
Q  219 tttaaaatagaatacaatcgcgggattttttgacat 254  Q
    |||||||||||||| |||||||||||||||||||||    
T  163645 tttaaaatagaatagaatcgcgggattttttgacat 163610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 281 - 588
Target Start/End: Complemental strand, 9857946 - 9857643
Alignment:
Q  281 atatagaaccaaatatggattcttatagaccttttttgctatccatatctaactagataatgttgttttgatataaggttctaacgaatccatatttctc 380  Q
    ||||||||| |||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||  |||||||||  ||||||||||| ||    
T  9857946 atatagaacgaaatatggattcgtatagaccatttttgctatc-atgtctaactagataatgttgttttgata--aggttctaaaaaatccatatttgtc 9857850  T
Q  381 nnnnnnnnnnattatcatattggcaaaaatttctaaattcnnnnnnntccacattttcgcgggcgaatattt-actctttcattataaatttaagatgta 479  Q
              |  ||||||||||||||||||| |||||||       ||||||||||| |  | |||||||| |||||||||||||||||||||||||||    
T  9857849 tttttttttta--atcatattggcaaaaatttataaattcaaaaaaatccacattttcacatgtgaatattttactctttcattataaatttaagatgta 9857752  T
Q  480 atgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatc 579  Q
    ||||  | |||| ||||||||||||||||||||||||||||||||||  |||| |||||| |||||| |||||| ||||||||| ||||||||||||||     
T  9857751 atgtcagattagcccacaactcctcaaaaaataatgaattcttagttttgtccaccatccaatctaatgaatcaataagattattaaatttaatataatt 9857652  T
Q  580 ttaggtatt 588  Q
    | |||||||    
T  9857651 tgaggtatt 9857643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 31265991 - 31266029
Alignment:
Q  143 cagaaccgtacatgagattttcacctcatacggctcctc 181  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  31265991 cagaaccgtacgtgagattttcatctcatacggctcctc 31266029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 49771361 - 49771397
Alignment:
Q  144 agaaccgtacatgagattttcacctcatacggctcct 180  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  49771361 agaactgtacataagattttcacctcatacggctcct 49771397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 6991 - 6873
Alignment:
Q  1 caagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttctttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6991 caagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacgaaatctggttctttt 6892  T
Q  101 ggggttatagttgatggtt 119  Q
    |||||||||||||||||||    
T  6891 ggggttatagttgatggtt 6873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 35195076 - 35194958
Alignment:
Q  1 caagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttctttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35195076 caagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacgaaatctggttctttt 35194977  T
Q  101 ggggttatagttgatggtt 119  Q
    |||||||||||||||||||    
T  35194976 ggggttatagttgatggtt 35194958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 233 - 48
Alignment:
Q  1 caagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttctttt 100  Q
    ||||||| |||||||||||| | |||||  ||||   |||||||||||| | | | || ||||||||||||| |||||||||||| |||| |||||||||    
T  233 caagtgcttgaagagcatatctaccgaaacaaatccgattacctcgataagatatccccttcattcttcctctatgttgtttacgaaatcgggttctttt 134  T
Q  101 ggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaa 186  Q
    |||||||||||||||| || ||| | ||||||||||||| |||||||| | |||||||| ||||  ||||| | ||||||||||||    
T  133 ggggttatagttgatgtttgtttatgaattccatctctactacagaactggacatgagagtttcttctcatccagctcctcgcgaa 48  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 54630176 - 54630277
Alignment:
Q  91 tggttcttttggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaataaa 190  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||| ||||||||    
T  54630176 tggttcttttggtgttatagttgatagttatttctcaattccatctctattacaaaatcgtacatgagattttcaccccatacagctcctcacgaataaa 54630275  T
Q  191 tc 192  Q
    ||    
T  54630276 tc 54630277  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 17223707 - 17223756
Alignment:
Q  131 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17223707 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 17223756  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 13227011 - 13226970
Alignment:
Q  141 tacagaaccgtacatgagattttcacctcatacggctcctcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13227011 tacagaaccgtacatgagattttcacctcatacggctcctcg 13226970  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 476
Target Start/End: Complemental strand, 31878258 - 31878210
Alignment:
Q  428 tccacattttcgcgggcgaatatttactctttcattataaatttaagat 476  Q
    |||||||||| |||  |||||| ||||||||| ||||||||||||||||    
T  31878258 tccacatttttgcgaccgaataattactctttaattataaatttaagat 31878210  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 31058865 - 31058812
Alignment:
Q  158 gattttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058865 gattttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 31058812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 14543052 - 14543003
Alignment:
Q  131 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14543052 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 14543003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 31058773 - 31058724
Alignment:
Q  219 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgta 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058773 tttaaaatagaatacaatcgcgggattttttgacatattagaaatttgta 31058724  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 4639423 - 4639385
Alignment:
Q  143 cagaaccgtacatgagattttcacctcatacggctcctc 181  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  4639423 cagaaccgtacgtgagattttcatctcatacggctcctc 4639385  T

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Target: scaffold0008 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 265168 - 265217
Alignment:
Q  131 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 180  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  265168 ccatctctattacagaaccgtacataagattttcacctcatacggctcct 265217  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 6930487 - 6930438
Alignment:
Q  131 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 180  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6930487 ccatctctaatacagaaccgtacatgagattttcacctcatacggctcct 6930438  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 1399923 - 1399882
Alignment:
Q  141 tacagaaccgtacatgagattttcacctcatacggctcctcg 182  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  1399923 tacagaaccgtacatgagattttcacctcatacgactcctcg 1399882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 18961112 - 18961072
Alignment:
Q  141 tacagaaccgtacatgagattttcacctcatacggctcctcg 182  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  18961112 tacagaaccgtacatgagattttcacctcata-ggctcctcg 18961072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 18993073 - 18993033
Alignment:
Q  141 tacagaaccgtacatgagattttcacctcatacggctcctcg 182  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  18993073 tacagaaccgtacatgagattttcacctcata-ggctcctcg 18993033  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 19153780 - 19153829
Alignment:
Q  131 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 180  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19153780 ccatctctattacagaaccgtacatgagattttcacctcgtacggctcct 19153829  T

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Target: scaffold0625 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 8623 - 8664
Alignment:
Q  141 tacagaaccgtacatgagattttcacctcatacggctcctcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8623 tacagaaccgtacatgagattttcacctcatacggctcctcg 8664  T

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Target: scaffold0330 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 13433 - 13478
Alignment:
Q  254 tattagaaatttgtatatcttgctttgatatagaaccaaatatgga 299  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  13433 tattagaaatttgtatattttgctttgatatagaaccaaatatgga 13478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 13377 - 13412
Alignment:
Q  219 tttaaaatagaatacaatcgcgggattttttgacat 254  Q
    |||||||||||||||||||||| |||||||||||||    
T  13377 tttaaaatagaatacaatcgcgagattttttgacat 13412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 17442387 - 17442435
Alignment:
Q  131 ccatctctattacagaaccgtacatgagattttcacctcatacggctcc 179  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  17442387 ccatctctattacaaaaccgtacatgagattttcacctcgtacggctcc 17442435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 8693 - 8731
Alignment:
Q  143 cagaaccgtacatgagattttcacctcatacggctcctc 181  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  8693 cagaaccgtacgtgagattttcatctcatacggctcctc 8731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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