View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13683_high_5 (Length: 537)
Name: NF13683_high_5
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_high_5 |
 | |
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| [»] scaffold0002 (2 HSPs) |
| | |
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| [»] scaffold0625 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 13227521 - 13228034
Alignment:
| Q |
1 |
aaaacaaatccactatatgttttacgtcaagcaatacgtcgcgtaactcccgatatagcagtaaaaataaaaacaagacgcgtaagcggatcgaataaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13227521 |
aaaacaaatccactatatgttttacgtcaagcaatacgtggcgtaactcccgatatagcagtaaaaacaaaaacaagacgcgtaagcggatcgaataaaa |
13227620 |
T |
|
| Q |
101 |
aagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcatcccgaaaacgtccgggtcgaaatatggctttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13227621 |
aagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcatcccgaaaacgtccgggtcgaaatatggctttcaa |
13227720 |
T |
|
| Q |
201 |
attaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaaatagagcttctgca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
13227721 |
attaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaaatagagcttttgca |
13227820 |
T |
|
| Q |
301 |
cattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatcaatagaaaaagaatc |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13227821 |
cattttcgttaatccatgagcagggtctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatcaatagaaaaagaatc |
13227920 |
T |
|
| Q |
401 |
ggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggggacttgcttaagaataaatataaataacga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
13227921 |
ggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaaggactttttgggacttgcttaagaataaatataaataacga |
13228020 |
T |
|
| Q |
501 |
ggaatttttggtat |
514 |
Q |
| |
|
||||| |||||||| |
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|
| T |
13228021 |
ggaatgtttggtat |
13228034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 101 - 398
Target Start/End: Complemental strand, 53883967 - 53883670
Alignment:
| Q |
101 |
aagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgt------tggttattaggcgcatcccgaaaacgtccgggtcgaaatatggc |
194 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53883967 |
aagttccggttgaaataggatccacattagaaaaagcacttaccattcgtattcgttggttattaggcgcatcccgaaaacgtccgggtcgaaatatggc |
53883868 |
T |
|
| Q |
195 |
tttcaaattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaaatagagct |
294 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
53883867 |
tttcaaattatgttccgaattagtgaatgctgccaaagggagtggctatgccatacacaaaaaggaagagactcatagaatggcagaggcaaatagatct |
53883768 |
T |
|
| Q |
295 |
tctgcacattttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatcaatagaaaa |
394 |
Q |
| |
|
| ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
53883767 |
tttgcacattttcattaatcaatgagcaggatctatacacacacatagacctatgtatggatccatcc------ataattggaaaagaatcaatagaaaa |
53883674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 2 - 490
Target Start/End: Original strand, 42679860 - 42680336
Alignment:
| Q |
2 |
aaacaaatccactatatgttttacgtcaagcaatacgtcgcgtaactcccgatatagcagtaaaaataaaaacaagacgcgtaagcggatcgaataaaaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||| ||||| ||||||||||||||||||||| | | | |
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|
| T |
42679860 |
aaacaaatccactatctgttttacgtcaagcaatacgtggcgtaactcctggtatagcattaaaag------caagacgcgtaagcggatcgactcatca |
42679953 |
T |
|
| Q |
102 |
agttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcatcccgaaaacgtccgggtcgaaatatggctttcaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |
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|
| T |
42679954 |
agttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcataccgaaaacgtccaggtcgaaatatggctctcaaa |
42680053 |
T |
|
| Q |
202 |
ttaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaaatagagcttctgcac |
301 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||| ||||| |
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|
| T |
42680054 |
ttaagttccgaattagtggatgctgctaaagggagtgacgatgccatacacaaaaaggaagagactcgtagaatggcagaagcaaatagagcttttgcac |
42680153 |
T |
|
| Q |
302 |
attttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatcaatagaaaaagaatcg |
401 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
42680154 |
attttcgttaatccatgagtaggatctatatacacacgtagacctatgtatggatccatac------ataattggaaaagaatcaatagaaaaagaatcg |
42680247 |
T |
|
| Q |
402 |
gaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggggacttgcttaagaataaata |
490 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42680248 |
gaattaatcgatatatctatggaaacgaaagacaaaatagaaatgatggctcaactaagcacttttggggacttgcttaagaataaata |
42680336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 302 - 514
Target Start/End: Original strand, 47522608 - 47522820
Alignment:
| Q |
302 |
attttcgttaatccatgagcaggatctatatacacacatagacctatgtatggatccatacataattataattggaaaagaatcaatagaaaaagaatcg |
401 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
47522608 |
attttcgttaatccatgagtaggatctatgtacacacatagacctatgtatggatccatacataattataattggaaaagaatcgatagaaaaagaatcg |
47522707 |
T |
|
| Q |
402 |
gaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagcacttttggggacttgcttaagaataaatataaataacgag |
501 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
47522708 |
gaattaatcgatatatttatcgaaacgaaagacgaaatagaaatgatggctcaactaaacacttttggggacttgcttaagaataaatataaataaccag |
47522807 |
T |
|
| Q |
502 |
gaatttttggtat |
514 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
47522808 |
gaatgtttggtat |
47522820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 18993532 - 18993575
Alignment:
| Q |
2 |
aaacaaatccactatatgttttacgtcaagcaatacgtcgcgta |
45 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
18993532 |
aaacaaatccactagctgttttacgtcaagcaatacgtggcgta |
18993575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 100 - 330
Target Start/End: Original strand, 191833 - 192063
Alignment:
| Q |
100 |
aaagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcatcccgaaaacgtccgggtcgaaatatggctttca |
199 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
191833 |
aaagttccgattgaaataggatctaaacaaggaagagcacttgccattcgttggttattagaagcatcccaaaagcgtccgggtcgaaatatggctttca |
191932 |
T |
|
| Q |
200 |
aattaagttccgaattagtggatgctgccaaagggagtggcgatgccatacgcaaaaagcaagagactcatagaatggcagaggcaaatagagcttctgc |
299 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
191933 |
aattaagttccgaattagtagatgctgccaaagggagtgggggtgccatacgcaaaaaggaagcgactcatagaatggcagaggcaaatagagctcttgc |
192032 |
T |
|
| Q |
300 |
acattttcgttaatccatgagcaggatctat |
330 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |
|
|
| T |
192033 |
acattttcgttaatccatgaacagaatctat |
192063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 191738 - 191794
Alignment:
| Q |
2 |
aaacaaatccactatatgttttacgtcaagcaatacgtcgcgtaactcccgatatag |
58 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| | ||||||||| |||||| |
|
|
| T |
191738 |
aaacaaatccactattggttttacgtcaagcaatacgtagagtaactcccaatatag |
191794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 369 - 490
Target Start/End: Complemental strand, 35934768 - 35934647
Alignment:
| Q |
369 |
ataattggaaaagaatcaatagaaaaagaatcggaattaatcgatatatctatcgaaacgaaagacgaaatagaaatgatggctcaactaagc-actttt |
467 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||| | |||||| |
|
|
| T |
35934768 |
ataattggaaaagaatcaatagaaaaataatcataattaatagatatatctatcgaaacgaaagac-aaatagaattgatggcttaactaaccaactttt |
35934670 |
T |
|
| Q |
468 |
ggggacttgcttaagaataaata |
490 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
35934669 |
gaggacttgcttaagaataaata |
35934647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0625 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 8165 - 8122
Alignment:
| Q |
2 |
aaacaaatccactatatgttttacgtcaagcaatacgtcgcgta |
45 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
8165 |
aaacaaatccactagctgttttacgtcaagcaatacgtggcgta |
8122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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