View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13683_high_6 (Length: 513)
Name: NF13683_high_6
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_high_6 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 68 - 513
Target Start/End: Complemental strand, 6953326 - 6952882
Alignment:
| Q |
68 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaatcgaatgccaatcctcgggctttatttgtaaagtctctattcc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6953326 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaatcgaatgccaatcctcgggctttatttgtaaagtctctattcc |
6953227 |
T |
|
| Q |
168 |
ttggtaatcaaaacccaaagatctatgaactattccgtgtttgactagccaagcagacaaatgaccctgcannnnnnnnnacttctcctgcnnnnnnnna |
267 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |
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| T |
6953226 |
ttggtaatcaaaacccaaagatctatgaactattccgtgtttgactagccaagcagacagatgaccctgcatttttttt-acttctcctgctttttttta |
6953128 |
T |
|
| Q |
268 |
tataagtttgatattagaatgaaatttttgaagattgacttgcttgctatttcttattgtattttgtacaaaaggatcctgtttaattcactttttcgtt |
367 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6953127 |
tataagtttggtattagaatgaaatttttgaagattgacttgcttgctatttcttattgtattttgtacaaaaggatcctgtttaattcactttttcgtt |
6953028 |
T |
|
| Q |
368 |
tgtcggaggatacttaacttttttatatttgaaaaatgtgtcagaggttatctctgaaatagatgatggttgataaaataatccttgattataattgccg |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6953027 |
tgtcggaggatacttaacttttttatatttgaaaaatgtgtcagaggttatctctgaaatagatgatggttgataaaataatccttgattataattgccg |
6952928 |
T |
|
| Q |
468 |
gtatgagtactgcgtccaagatgaaatttgtggttcgtagtaaaac |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6952927 |
gtatgagtactgcgtccaagatgaaatttgtggttcgtagtaaaac |
6952882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 68 - 307
Target Start/End: Complemental strand, 42810274 - 42810036
Alignment:
| Q |
68 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaatcgaatgccaatcctcgggctttatttgtaaagtctctattcc |
167 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
42810274 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaattgaatgccaatcctctggctttatttgtaaagtctctattcc |
42810175 |
T |
|
| Q |
168 |
ttggtaatcaaaacccaaagatctatgaactattccgtgtttgactagccaagcagacaaatgaccctgcannnnnnnnnacttctcctgcnnnnnnnna |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| | |
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| T |
42810174 |
ttggtaatcaaaacccaaagatctatgaactattccgtgtttgactagccaagtagacagatgaccctgca-ttttttttacttctcctgctttttttta |
42810076 |
T |
|
| Q |
268 |
tataagtttgatattagaatgaaatttttgaagattgact |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
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| T |
42810075 |
tataagtttggtattagaatgaaatttttgaagattgact |
42810036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 68 - 513
Target Start/End: Original strand, 18184763 - 18185207
Alignment:
| Q |
68 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaatcgaatgccaatcctcgggctttatttgtaaagtctctattcc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18184763 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaatcgaatgccaatcctcgggctttatttgtaaagtctctattcc |
18184862 |
T |
|
| Q |
168 |
ttggtaatcaaaacccaaagatctatgaactattccgtgtttgactagccaagcagacaaatgaccctgcannnnnnnnnacttctcctgcnnnnnnnna |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |
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| T |
18184863 |
ttggtaatcaaaacccaaagatctatgaactattccgtgtttgactagccaagcagacagatgaccctgcatttttttt-acttctcctgctttttttta |
18184961 |
T |
|
| Q |
268 |
tataagtttgatattagaatgaaatttttgaagattgacttgcttgctatttcttattgtattttgtacaaaaggatcctgtttaattcactttttcgtt |
367 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18184962 |
tataagtttggtattagaatgaaatttttgaagattgacttgcttgctatttcttattgtattttgtacaaaaggatcctgtttaattcactttttcgtt |
18185061 |
T |
|
| Q |
368 |
tgtcggaggatacttaacttttttatatttgaaaaatgtgtcagaggttatctctgaaatagatgatggttgataaaataatccttgattataattgccg |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18185062 |
tgtcggaggatacttaacttttttatatttgaaaaatgtgtcagaggttatctctgaaatagatgatggttgataaaataatccttgattataattgccg |
18185161 |
T |
|
| Q |
468 |
gtatgagtactgcgtccaagatgaaatttgtggttcgtagtaaaac |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18185162 |
gtatgagtactgcgtccaagatgaaatttgtggttcgtagtaaaac |
18185207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 43073342 - 43073245
Alignment:
| Q |
68 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaatcgaatgccaatcctcgggctttatttgtaaagtctctatt |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
43073342 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaaccgaatgccaatcctcgggctttatatgtaaagtctctatt |
43073245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 268 - 483
Target Start/End: Original strand, 50531175 - 50531398
Alignment:
| Q |
268 |
tataagtttgatattagaatgaaatttttgaagattgacttgcttgctatttcttattgtattttgtacaaaaggatcctgtttaattcactttttcgtt |
367 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |
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| T |
50531175 |
tataagtttggtattagaatgaaatttttgaagattgacttgcttgctatttcttattgtattttgtacaaaaggatcttgattaattcactttttcatt |
50531274 |
T |
|
| Q |
368 |
tgtcggaggatacttaacttttttatatttgaaaaatgtgtcagaggttatctctgaaa---------tagatgatggttgataaaataatccttgatta |
458 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50531275 |
tgtcggagaatacttaacttttttatatttgaaaaatgtgtca-aggttatctctgaaatagatgatgtagatgatggttgataaaataatccttgatta |
50531373 |
T |
|
| Q |
459 |
taattgccggtatgagtactgcgtc |
483 |
Q |
| |
|
||||||| ||||||||||||||||| |
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| T |
50531374 |
taattgctggtatgagtactgcgtc |
50531398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 14749245 - 14749073
Alignment:
| Q |
68 |
cataggcacattgggaacgtagataattgtaaccatatacata----taaaataacagcaatcgaatgccaatcctcgggctttatttgtaaagtctcta |
163 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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|
| T |
14749245 |
cataggcacattgggaacgtaggtaattgtaaccatatacatacatataaaataacagcaattgaatgccaatcctcgggctttatttgtaaagtct--a |
14749148 |
T |
|
| Q |
164 |
ttccttggtaatcaaaacccaaagatctatgaactattccgtgtttgactagccaagcagacaaatgaccctgca |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
14749147 |
ttccttggtaatcaaaacccaaagatctgtaaactattccgtgtttgattagccaagcagacaaattaccttgca |
14749073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 35457727 - 35457634
Alignment:
| Q |
145 |
tttatttgtaaagtctctattccttggtaatcaaaacccaaagatctatgaactattccgtgtttgactagccaagcagacaaatgaccctgca |
238 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
35457727 |
tttatttgtaaaatctctattccttagtaatcaaaactcaaagatatgtgaactattccgtgtttgactagccacgcagacaaattaccctgca |
35457634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 35457590 - 35457499
Alignment:
| Q |
267 |
atataagtttgatattagaatgaaatttttgaagattgacttgcttgctatttcttattgtattttgtacaaaaggatcctgtttaattcacttttt |
363 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||| |||||||| |
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|
| T |
35457590 |
atataagtttggtattataatgaaatttttgaagattga----cttataatttcttattgtattttgtacaaaaggattctg-ttaatacacttttt |
35457499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 248761 - 248912
Alignment:
| Q |
68 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaatcgaatgccaatcctcgggctttatttgtaaagtctctattcc |
167 |
Q |
| |
|
|||| ||||||||||| |||| |||||| |||||||||||||||||||| |||||||| |||| ||||||| | | ||||||||||||||||||||||| |
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|
| T |
248761 |
cataagcacattgggagcgtaaataattataaccatatacatataaaatgacagcaatggaatcccaatcccctgcttttatttgtaaagtctctattcc |
248860 |
T |
|
| Q |
168 |
ttggtaatcaaaacccaaagatctatgaactattccgtgtttgactagccaa |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
248861 |
ttggtaatcaaagcccaaagatctatgaaccacctcatgtttgactagccaa |
248912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 9976988 - 9976882
Alignment:
| Q |
68 |
cataggcacattgggaacgtagataattgtaaccatatacatataaaataacagcaatcgaatgccaatcctcgggctttatttgtaaagtctctattcc |
167 |
Q |
| |
|
||||| ||||||||| || || |||||||||| |||||| ||| | || |||| |||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
9976988 |
catagacacattgggtacatatataattgtaaacatataaatacagaa-aacaacaatcgaatgccaatccttaggctttatttgtgaagtctctattcc |
9976890 |
T |
|
| Q |
168 |
ttggtaat |
175 |
Q |
| |
|
|||||||| |
|
|
| T |
9976889 |
ttggtaat |
9976882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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