View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13683_high_9 (Length: 404)
Name: NF13683_high_9
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 30730426 - 30730022
Alignment:
| Q |
11 |
attattcttaacaattttgttttatcatatagttgttccatgtgtactatatagggtattaatgttctgaaaacaacagaatataa------------at |
98 |
Q |
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| T |
30730426 |
attatttttaatcattttgttttatcatatagttgttccatgtgtactatatagggcataaatgttctgaaaacaatagaatataataatgcaattatat |
30730327 |
T |
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| Q |
99 |
atgaactaaaattaaataatagtacgtactacgtagatgcatggctgttaaattctattttataattaatgataatggtaatactatgtcgtatcttaat |
198 |
Q |
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| T |
30730326 |
atgaacttaaattaaataatagtacgtactacgtagatgcatggctgttaaattctattttataattaatgataatggtaatactatgtcgtatcttaat |
30730227 |
T |
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| Q |
199 |
cggcttccaaatccatgtgtgcaggaatattacataaacaaatactccataagtagcttataaaatataataaaaatacttaattttttgaaggaataaa |
298 |
Q |
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| T |
30730226 |
cggcttccaaatccatgtgtgcaggaatattaaataaacaaatactccataagtagcttataaaatataataaaaatacttcatttttt-aaggaataaa |
30730128 |
T |
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| Q |
299 |
atatactccataagtagaccaattgcttcagcaaaggtagctaaacacatattttcttcgttgttcacttgtacaagccacttagtattattgcttaaga |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30730127 |
atatactccataagtagaccaattgcttcagcaaaggtagctaaacacatattttcttcgttgttcacttgtacaagccacttagtattattgcttaaga |
30730028 |
T |
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| Q |
399 |
acaagg |
404 |
Q |
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|||||| |
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| T |
30730027 |
acaagg |
30730022 |
T |
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