View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13683_low_2 (Length: 384)
Name: NF13683_low_2
Description: NF13683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13683_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 366
Target Start/End: Complemental strand, 27076075 - 27075721
Alignment:
| Q |
10 |
acatcatcacatagaacatcataagtcatatatagattcatatgtcctcaaaattacatctccttctatatcgacaataattttttaaatagattgacat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
27076075 |
acatcatcacatagaacatcataagtcatatatagattcat--gtcctcaaaattacatctccttctatatcaacaataattttttaaatatattgacat |
27075978 |
T |
|
| Q |
110 |
gcttactcaaattcttacattttagtaaaattaaggtatttcaaactcatttatatgcttcatcatcatgagtgcattttcttactactctttcttgatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27075977 |
gcttactcaaattcttacattttagtaaaattaaggtatttcaaactcatttatatgcttcatcatcatgagtgcattttcttactactctttcttgatg |
27075878 |
T |
|
| Q |
210 |
tcacctttgatgttctgggtttgtatatgatgaaacaatagatatctctaaaggtagcctcttcatgttggagcatatgcaagtaatgaccaagttgagg |
309 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27075877 |
tcacctttgatgttctgggtttgtatatgatgaaacaatagatatctctaaaggtagcctcttcatgttggcgcatatgcaagtaatgaccaagttgagg |
27075778 |
T |
|
| Q |
310 |
ccctttgtccgcacatttcttaaacaagcaagtgaaatgtttgaaatgtacatctac |
366 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27075777 |
ccctttgtccgcacatttcttaaacaagcaagtgaaatgtttgaaatgtacatctac |
27075721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 26989200 - 26989579
Alignment:
| Q |
10 |
acatcatcacatagaacatcataagtcatatataga-----ttcatatgtcctcaaaattacatctccttctatatcgacaataattttttaaatagatt |
104 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
26989200 |
acatcatcacatagaacatcataagttatatatagagtagattcatat--cctcaaaattacatctcctcctatatcgacaataagtttttaaatagatt |
26989297 |
T |
|
| Q |
105 |
gacatgcttactcaaattcttacattttagtaaaattaaggtatttcaaactcatttatatgcttcatcatcatgagtgcattttcttactactctttct |
204 |
Q |
| |
|
|| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
26989298 |
gaaatacttactcaaattcatacattttagtaaaattagggtatttcaaactcatttatatgtttcatcatcatgagtgcattttcttactactctttct |
26989397 |
T |
|
| Q |
205 |
tgatgtcacctttgatgttctgggt----------------------ttgtatatgatgaaacaatagatatctctaaaggtagcctcttcatgttggag |
282 |
Q |
| |
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|||| ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26989398 |
tgatttcacc--tgatgttctgggtttttatggctttctttctgaacttgtatacaatgaaacaatagatatctctaaaggtagcctcttcatgttggag |
26989495 |
T |
|
| Q |
283 |
catatgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaaacaagcaagtgaaatgtttgaaatgtacatctac |
366 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
26989496 |
catgtgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaaagaagcaagtgaaatgtttgaaatgtacatctac |
26989579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 230 - 366
Target Start/End: Original strand, 27028262 - 27028398
Alignment:
| Q |
230 |
ttgtatatgatgaaacaatagatatctctaaaggtagcctcttcatgttggagcatatgcaagtaatgaccaagttgaggccctttgtccgcacatttct |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27028262 |
ttgtatatgatgaaacaatagatatctctaaaggtagcctcttcatgttggagcatgtgcaagtaatgaccaagttgaggccctttgtccgcacatttct |
27028361 |
T |
|
| Q |
330 |
taaacaagcaagtgaaatgtttgaaatgtacatctac |
366 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
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|
| T |
27028362 |
taaagaagcaagtgaaatgtttgaaatgtacatctac |
27028398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 233 - 366
Target Start/End: Original strand, 21433445 - 21433578
Alignment:
| Q |
233 |
tatatgatgaaacaatagatatctctaaaggtagcctcttcatgttggagcatatgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaa |
332 |
Q |
| |
|
||||||||||||||||||||||| | | |||||| |||||| | |||||||||| |||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
21433445 |
tatatgatgaaacaatagatatcgccagaggtagactcttcgtattggagcataggcaaagaatggccaagttgaggccctttgtccgcacatttcttaa |
21433544 |
T |
|
| Q |
333 |
acaagcaagtgaaatgtttgaaatgtacatctac |
366 |
Q |
| |
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| |||||||| ||||||||||||||||||||||| |
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| T |
21433545 |
agaagcaagtaaaatgtttgaaatgtacatctac |
21433578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 27152446 - 27152548
Alignment:
| Q |
261 |
aggtagcctcttcatgttggagcatatgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaaacaagcaagtgaaatgtttgaaatgtac |
360 |
Q |
| |
|
||||||||||||| | ||||| ||||||| ||||| ||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
27152446 |
aggtagcctcttcgtattgga---tatgcaaagaatgaacaagttgaggcccttcgtccgtacatttcttaaagaagcaagtgaagtgtttgaaatgtac |
27152542 |
T |
|
| Q |
361 |
atctac |
366 |
Q |
| |
|
|||||| |
|
|
| T |
27152543 |
atctac |
27152548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 27152086 - 27152152
Alignment:
| Q |
10 |
acatcatcacatagaacatcataagtcatatataga-ttcat--atgtcctcaaaattacatctcct |
73 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||| |
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|
| T |
27152086 |
acatcatcacatagaacatcataagttatatatagagtagattcatgtcctcaaaattacatctcct |
27152152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 34691275 - 34691654
Alignment:
| Q |
10 |
acatcatcacatagaacatcataagtcatatatagattc-at--atgtcctcaaaattacatctccttctatatcgacaataattttttaaatagattga |
106 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
34691275 |
acatcatcacatagaacatcataagttatatatagagtagattcatgtcctcaaaattacatctcctcctatatcgacaataagtttttaaatagattga |
34691374 |
T |
|
| Q |
107 |
catgcttactcaaattcttacattttagtaaaattaaggtatttcaaactcatttatatgcttcatcatcatgagtgcattttcttactactctttcttg |
206 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691375 |
aatacttactcaaattcatacattttagtaaaattagggtatttcaaactcatttatatgtttcatcatcatgagtgcattttcttactactctttcttg |
34691474 |
T |
|
| Q |
207 |
atgtcacctttgatgttctgggt----------------------ttgtatatgatgaaacaatagatatctctaaaggtagcctcttcatgttggagca |
284 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34691475 |
atttcacc--tgatgttctgggtttttatggctttctttctgaacttgtatacaatgaaacaatagatatctctaaaggtagcctcttcatgttggagca |
34691572 |
T |
|
| Q |
285 |
tatgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaaacaagcaagtgaaatgtttgaaatgtacatctac |
366 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34691573 |
tgtgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaaagaagcaagtgaaatgtttgaaatgtacatctac |
34691654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 366
Target Start/End: Complemental strand, 50173072 - 50172953
Alignment:
| Q |
247 |
atagatatctctaaaggtagcctcttcatgttggagcatatgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaaacaagcaagtgaaa |
346 |
Q |
| |
|
|||||| |||| ||||| |||||||||| ||||||||||||| | ||||| |||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
50173072 |
atagatgtctccaaaggcagcctcttcaaactggagcatatgcacatgatgacaaagttgaggccctttgtccgtacatttcttaaagaagcaagtgaaa |
50172973 |
T |
|
| Q |
347 |
tgtttgaaatgtacatctac |
366 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
50172972 |
tgtttgagatgtacatctac |
50172953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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