View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13684_low_1 (Length: 603)
Name: NF13684_low_1
Description: NF13684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13684_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 10600956 - 10601550
Alignment:
| Q |
1 |
tcggagcagtgtgatgagaagatgtttgagggtgtttttgatgttaaaaaggaagtaaagagtggaggaagtggcgagttttatgctaaagatggaacag |
100 |
Q |
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| T |
10600956 |
tcggagcagtgtgatgagaagatgtttgagggtgtttttgatgttaaaaaggaagtaaaaagtggaggaagtggcaagttttatgctaaagatggaacag |
10601055 |
T |
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| Q |
101 |
ttgaaaactcgattacaataatttcagatgaatatggtgaaagtgatgaaaaacactccatgaaacgaaagttaaaagaagaaccttttgttgttcatga |
200 |
Q |
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| T |
10601056 |
ttgaaaacccgattacaataatttcagatgaatatggtgaaagtgatgaaaaacactccaagaaacgaaagttaaaagaagaaccttttgttgttcatga |
10601155 |
T |
|
| Q |
201 |
taattctgaggttattttcattgatattggtgatgagaagatgtttgtggatggttatgatgttaccgagaatgtgaaaattgatgaaagtggcaggttt |
300 |
Q |
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| T |
10601156 |
taattctgaggttattttctttgatattggtgatgagaagatgtttgtggatggttatgatgttaccgagaatgtgaaaattgatgaaagtggcaagttt |
10601255 |
T |
|
| Q |
301 |
gatgcgaaagatggaaactttgttgacgaaaagtgtggttggacgcttgaaaacccgattacaatacaatcagatgacgaacactctgttagttctgatt |
400 |
Q |
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| T |
10601256 |
gatgcgaaagatggaaagtttgttgacgaaaagtgtggttggacacttgaaaacccgattacaatacaatcagatgacgaacactctgttagttctgatt |
10601355 |
T |
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| Q |
401 |
ctaatgatgatgaagaagaagaaaattatgataatgttaaacagggagaaaaaagtggagcaagcgatgagtctgctgataaagata-nnnnnnngtaga |
499 |
Q |
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| T |
10601356 |
ctaatgatgatgaagaagaagaaaattatgataatgttaaacagggagaaaaaagtggagcaagcgatgagtctgctgataaagatattttttttgtaga |
10601455 |
T |
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| Q |
500 |
tttggatgattctgatgagagtgatgaagaacactctgttggttctgcttctgattcagattcagattccaattctgattctgatgatgatgatg |
594 |
Q |
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| T |
10601456 |
tttggatgattctgatgagagtgatgaagaacactctgttggttctgcttctgattcagattcagattccaattctgattctgatgatgatgatg |
10601550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 428 - 534
Target Start/End: Original strand, 10601548 - 10601655
Alignment:
| Q |
428 |
atgataatgttaaacagggagaaaaaagtggagcaagcgatgagtctgctgataaagatannnnnnn-gtagatttggatgattctgatgagagtgatga |
526 |
Q |
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| T |
10601548 |
atgataatgttcaagagggtgcaaaaagtggaggaagtggtgagtttgctgataaagataatttttttgttgatttggatgattctgatgagagtgatga |
10601647 |
T |
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| Q |
527 |
agaacact |
534 |
Q |
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| T |
10601648 |
agaacact |
10601655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 16992866 - 16992826
Alignment:
| Q |
298 |
tttgatgcgaaagatggaaactttgttgacgaaaagtgtgg |
338 |
Q |
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| T |
16992866 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg |
16992826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Complemental strand, 17008539 - 17008511
Alignment:
| Q |
515 |
tgagagtgatgaagaacactctgttggtt |
543 |
Q |
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| T |
17008539 |
tgagagtgatgaagaacactctgttggtt |
17008511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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