View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13684_low_2 (Length: 583)
Name: NF13684_low_2
Description: NF13684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13684_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 20 - 567
Target Start/End: Complemental strand, 48083724 - 48083177
Alignment:
| Q |
20 |
taatcaatgccatatggataattgtcggctcgggccgtggtagcaagaaagtcattgttaccactgtccactagagaatctccaaaaacaaagaaagctc |
119 |
Q |
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| T |
48083724 |
taatcaatgccatatggataattgtcggctcgggccgtggtagcaagaaagtcattgttaccactgtccactagagaatctccaaaaacaaagaaagctc |
48083625 |
T |
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| Q |
120 |
ttggttgagcataagcgcaaccaacaaagcttatcattacacaaaaagcaatcaccaaagaagtagccattgcaatgcaaaataattgagaggactgaga |
219 |
Q |
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| T |
48083624 |
ttggttgagcataagcacaaccaacaaagcttatcattacacaaaaagcaatcaccaaagaagtagccattgcaatgcaaaataattgagaggactgaga |
48083525 |
T |
|
| Q |
220 |
agtgttactaaattgtatgtgatgtatcaatttgataactcgtggtttgtatggaacatgcaaatgagaagggtatatataaggttgaattcacacattc |
319 |
Q |
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| T |
48083524 |
agtgttactaaattgtatgtgatgtatcaatttgataactcgtggtttgtatggaacatgcaaatgagaagggtatatataaggttgaattcacacattc |
48083425 |
T |
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| Q |
320 |
tgtaaataacactcattaatgttattttctaccacacctcccagtgatttaaagcaaaccgccgaatgaagaaaattcaagtgcctcacataattgctca |
419 |
Q |
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| T |
48083424 |
tgtaaataacactcattaatgttattttctaccacacctcccagtgatttaaagcaaaccgccgaatgaagaaaattcaagtgcctcacataattgctca |
48083325 |
T |
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| Q |
420 |
atgatcattgctcttaaattagatatagaattgaagtgaaaacatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaa |
519 |
Q |
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| T |
48083324 |
atgatcattggtcttaaattagatatagaattgaagtgaaaacatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaa |
48083225 |
T |
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| Q |
520 |
atgactctcagtcagagttattcttcatcataactacagacaaacatg |
567 |
Q |
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| T |
48083224 |
atgactctcaatcagatttattcttcatcataactacagacaaacatg |
48083177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 452 - 552
Target Start/End: Complemental strand, 48065886 - 48065786
Alignment:
| Q |
452 |
gaagtgaaaacatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgactctcagtcagagttattcttcatcata |
551 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48065886 |
gaagtggaaatatccatctaacttcaagtacatgtaatttctagccgccaatgtagccagagtttaaaatgactctcagtcagatttattcttcatcata |
48065787 |
T |
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| Q |
552 |
a |
552 |
Q |
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| T |
48065786 |
a |
48065786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 48066212 - 48066151
Alignment:
| Q |
56 |
gtggtagcaagaaagtcattgttaccactgtccac--tagagaatctccaaaaacaaagaaa |
115 |
Q |
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| T |
48066212 |
gtggtagcaacaaaatcattgttaccactgtccactataaagaatctcccaaaacgaagaaa |
48066151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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