View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13685_high_1 (Length: 872)
Name: NF13685_high_1
Description: NF13685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13685_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 10 - 749
Target Start/End: Original strand, 32850656 - 32851417
Alignment:
| Q |
10 |
gacatcatctgtgaaggaagcgcggatttaaggtaatcctgtgacatagaacacatgagaacagaattgttaaattcaaagggttagttaaacagaatga |
109 |
Q |
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| T |
32850656 |
gacataatctgtgaaggaagcgcggatttaaggtaatcctgtgacatagaacacatgagaacagaattgttaaattcaaagggttagttaaacagaatga |
32850755 |
T |
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| Q |
110 |
gagagaaagtaccattggaaattagagtttgcagaatttgatgatttttcctcttgttcttgttcttagtggaagttttgaactgagaaaagagagcact |
209 |
Q |
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| T |
32850756 |
gagagaaagtaccattggaaattagagtttgcagaatttgatgatttttcctcttgttcttgttcttagtggaagttttgaactgagaaaagagagcact |
32850855 |
T |
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| Q |
210 |
ttctcatgttcgtttttgaactccaaaatacactaatttcttctactcattctactc--tctctatattttttggaccaggttttgatgctttagcaaat |
307 |
Q |
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| T |
32850856 |
ttctcatgttcgtttttgaactccaaaatacactaatttcttctactcattctactctttctctatatttttaggaccaggttttgatgctgtagcaaat |
32850955 |
T |
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| Q |
308 |
gcatgcagtttcacatagttttttatcttagtcgtctatttgatattaaacggttgagattgaaaactgtgttattttt--------------gatcata |
393 |
Q |
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| T |
32850956 |
gcatgcagtttcacacagtttttgatcttaatcgtctatttaatattaaacggttgagattgaaaactgtgtcatttttgttaaaacaatctcgatcata |
32851055 |
T |
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| Q |
394 |
cagttatgatcggatgtctatcattcattacagcactctactgtaacagcagaaaatcttgttccatatttttatgttctgtttcgttgtatttatattt |
493 |
Q |
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| T |
32851056 |
cagttatgatcggatgtctatcattcattacagcactctactctaacagcagaaaatcttgttccatatttttatgttctgtttcgttgtatttatattt |
32851155 |
T |
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| Q |
494 |
gagtaacgctaacaacactcaattttaaacccaatatgtaata--cacacaaagtgatgagacatatattaatttcattcaatataaat----gtgggtg |
587 |
Q |
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| T |
32851156 |
gagtaacgctaacaacattcagttttaaacttaatctttaatactcacacaaaataatgagacatatattaatttcataaaatataaatgtgggtgggtg |
32851255 |
T |
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| Q |
588 |
ttgaaaaataaatgttgttagcgttcccctttatattttatttgtttttaaatttacatttnnnnnnnttgctatgagaaaatttgtaaaataaaacatt |
687 |
Q |
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| T |
32851256 |
ttgacaaataaatgttgttaacgttcctcttcatattttatttgtttttaaatttacatttaaaaaaattgttatgagaaaatttgtaaaataaaacatt |
32851355 |
T |
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| Q |
688 |
caactaatttaatactaaatatttggtttgcaaattttctatagttttgctatggatgtaga |
749 |
Q |
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| T |
32851356 |
caactaatttaatactaaatatttggtttgcaaattttctatagttttgctatggatgtaga |
32851417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 799 - 857
Target Start/End: Original strand, 32851467 - 32851525
Alignment:
| Q |
799 |
ctgggttgtcaaaggtaattttgtccagagaaaagttggacaaaatagttagttaactg |
857 |
Q |
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| T |
32851467 |
ctgggttgtaaaaggtaattttgtccatagaaaagttcgacaaaatagttagttaactg |
32851525 |
T |
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