View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13686_high_10 (Length: 339)
Name: NF13686_high_10
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 35865873 - 35866190
Alignment:
| Q |
9 |
atggacatcatcagagccttacacttggccaaaaacgacgtcacttccgccatcaacatcatcttcgatactcaacgagtttctcttccaaaatccactc |
108 |
Q |
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| T |
35865873 |
atggaaatcatcagagccttacacttggccaaaaacgacgtcacttccgccatcaacatcatcttcgatactcaacgagtttctcttccaaaatccactc |
35865972 |
T |
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| Q |
109 |
cacgcgcttccaacactcaacgaggttctcctccgaattcaaccccacgcgccgtcgtcccacgcgctgt------cactgccacctccaagagcaacgc |
202 |
Q |
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| T |
35865973 |
cacgcgcttccaacactcaacgaggttctcctccgaattcaaccccacgcgccgtcgtcccaggcgctgtcactgccactgccacctccaagagcaacgc |
35866072 |
T |
|
| Q |
203 |
taatgcagaaaacaataaatgctccgtcgaattggaatccaaagattggtggtttgtcggttcaggcgaagtggcggggttgtccacttgtaaagggagg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35866073 |
taatgcagaaaacaataaatgctccgtcgaattggaatccaaagattggtggtttgtcggttcaggcgaagtggcggggttgtccacttgtaaagggagg |
35866172 |
T |
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| Q |
303 |
aatataaaagccggtgat |
320 |
Q |
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|||||||||||||||||| |
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| T |
35866173 |
aatataaaagccggtgat |
35866190 |
T |
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