View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13686_high_2 (Length: 616)
Name: NF13686_high_2
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 71 - 598
Target Start/End: Complemental strand, 34306606 - 34306099
Alignment:
| Q |
71 |
gtattgtgctacttcatataatacagttgttttcatcatttatgtatagaaaaagataaaatcatttaatacttttcaaactgacatgttattgttttta |
170 |
Q |
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| T |
34306606 |
gtattgtgctacttcatataatacagttgttttcatcatttatgtatagaaaaagataaaatcatttaatacttttcaaactgacatgttattgttttta |
34306507 |
T |
|
| Q |
171 |
ttctacaaatttacatataaaagaaatgctcacacaactnnnnnnnn-ttggatccgtcagttttgtatcgtatgccacatattttcaggataaattctc |
269 |
Q |
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| T |
34306506 |
ttctacaaatttacatataaaagaaatgctcacacaactaaaaaaaaattggatccgtcagttttgtatcgtatgccacatattttcaggataaattctc |
34306407 |
T |
|
| Q |
270 |
cttagaagaagctcaaagaataaacgttggtgctcctaatgaagcttctattaggtctggaatctcccctcataatcttttggcattttgggagtattga |
369 |
Q |
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| T |
34306406 |
cttagaagaagctcaaagaataaacgttggtgctcctaatgaagcttctattaggtctggaatctcccctcataatcttttggcattttgggagtattga |
34306307 |
T |
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| Q |
370 |
aaaagcctaagtcccaacttgcgtataagatcaaaatagagctagcataccttagacaattaccatatttacaagtcgatttttcccatacacatgcatt |
469 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
34306306 |
aaaagcctaagtcccaacttgcatataagatcaaaatagagctagcataccttagacaattaccatatttataagt--------------------catt |
34306227 |
T |
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| Q |
470 |
tgggctctgctgaaagtttccaaaggaatgaaggtggtcattgtgttccaaaaattgtagcaccactacactgccaagaattacaaaaaatgtaatattt |
569 |
Q |
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| T |
34306226 |
tgggctctgctgaaagtttccaaaggaatgaaggtggtcattgtgttccaaaaattgtagcaccactacactgccaagaattac-aaaaatgtaatattt |
34306128 |
T |
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| Q |
570 |
tcagtcatttttgttcacaattatgcttc |
598 |
Q |
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| T |
34306127 |
tcagtcatttttgttcacaattatgcttc |
34306099 |
T |
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