View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13686_high_21 (Length: 242)
Name: NF13686_high_21
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 49008736 - 49008959
Alignment:
| Q |
1 |
ttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008736 |
ttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagtt |
49008835 |
T |
|
| Q |
101 |
ggtgtttaaggagaaaaatgaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttggaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008836 |
ggtgtttaaggagaaaaatgaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttggaca |
49008935 |
T |
|
| Q |
201 |
gactcgaaacacaatgtcagaagt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49008936 |
gactcgaaacacaatgtcagaagt |
49008959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 9947920 - 9947862
Alignment:
| Q |
48 |
gccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtt |
106 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
9947920 |
gccaacattactcctatcaaagggtttcatgtcagtgttatcccaaacaagttggtgtt |
9947862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 8958637 - 8958694
Alignment:
| Q |
64 |
ttgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||| |
|
|
| T |
8958637 |
ttgaagggttccatgtcagtgttatcccaaacaagttggtattcaatgagaagaatga |
8958694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 8975049 - 8975089
Alignment:
| Q |
66 |
gaagggttccatgttagtgttatcccaaacaagttggtgtt |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8975049 |
gaagggttccatgttagagttatcccaaataagttggtgtt |
8975089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 25927991 - 25927947
Alignment:
| Q |
77 |
tgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
25927991 |
tgttagtgttatcccaaacaagttagtgtttaatgagaagaatga |
25927947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University