View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13686_high_9 (Length: 347)
Name: NF13686_high_9
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 37339741 - 37339412
Alignment:
| Q |
1 |
ataagacactaaaaaataatagcaatgggnnnnnnnntatagttcattcataattcattcataaaaataagacgctaaaaatatagttcaggattcaggg |
100 |
Q |
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| T |
37339741 |
ataagacactaaaaaataatagcaatgg-aaaaaaaatatagttcattcataattcattcataaaaataagacgctaaaaatatagttcaggattcaggg |
37339643 |
T |
|
| Q |
101 |
ttcgtaaagatctcaatgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaatggtttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37339642 |
ttcgtaaagatctcaatgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaatggtttcaa |
37339543 |
T |
|
| Q |
201 |
tatcatttataggaaggcttaaatattttttccacttttccaaccaacttcgagagtctcgtatacttatcccatatgggaaacctagcttcaacacatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
37339542 |
tatcatttataggaaggcttaaatattttttccacttttccaaccaacttcgagagtcttgtatacttatcccatatgggaaacctagcttcaacacagg |
37339443 |
T |
|
| Q |
301 |
taccnnnnnnnctatcttcaattgtgcttgc |
331 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
37339442 |
taccaaaaaaactatcttcaattgtgcttgc |
37339412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 117 - 304
Target Start/End: Original strand, 11299217 - 11299403
Alignment:
| Q |
117 |
tgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaatggtttcaatatcatttataggaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11299217 |
tgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatggctttttcaattggccaatggtttcaatatcatttataggaag |
11299316 |
T |
|
| Q |
217 |
gcttaaatattttttccacttttccaaccaacttcgagagtctcgtatacttatcccatatgggaaacctagcttcaacacatgtacc |
304 |
Q |
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||| ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
11299317 |
gctaaaata-tttttccacttttccaacccactttgagagtctcgtatacttatcccatatgggaaacctagcttcaatacaggtacc |
11299403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 101 - 331
Target Start/End: Original strand, 47966440 - 47966668
Alignment:
| Q |
101 |
ttcgtaaagatctcaatgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaatggtttcaa |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
47966440 |
ttcgtaatgatctcaatgccatttaatcattccttcatattatcaaaaataataaataatcattcattcaatatctttttcaaatggacaatggtttcaa |
47966539 |
T |
|
| Q |
201 |
tatcatttataggaaggcttaaatattttttccacttttccaaccaacttcgagagtctcgtatacttatcccatatgggaaacctagcttcaacacatg |
300 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
47966540 |
tatcatttataggaaggcttaaata-tttgtccacttttccaacccactttgagagtctcgtatacttatcccatatggg-aacctagcttcaacacaag |
47966637 |
T |
|
| Q |
301 |
taccnnnnnnnctatcttcaattgtgcttgc |
331 |
Q |
| |
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|||| ||||||||| |||||||||| |
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| T |
47966638 |
taccaaacaaactatcttcatttgtgcttgc |
47966668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 33315256 - 33315173
Alignment:
| Q |
109 |
gatctcaatgccatttaatcattcattcatattatcaaaaataataaataatcattcattcaatagctttttcaattggacaat |
192 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||| |||||||| |||||||| |
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| T |
33315256 |
gatctcaatgtcatttaattattcattcatattatcaataataataaataatcattctttcaataaatttttcaaatggacaat |
33315173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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