View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13686_low_1 (Length: 819)
Name: NF13686_low_1
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 45698990 - 45698493
Alignment:
| Q |
1 |
aatcaatctcctctttcttctctcatccaggtaaggtaacataacaatatggattatctatctatctatctatttttaatttaatattaattttctgcct |
100 |
Q |
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| T |
45698990 |
aatcaatctcctctttcttctctcatccaggtaaggtaacataacaatatggattatctatctatctat----ttttaatttaatattaattttctgcct |
45698895 |
T |
|
| Q |
101 |
ttggggggagggtttggcagctaagatagtttgagaattcatttcttttctttttgcaggctgaaatgatcttcttctctgccaaaacaaatattatatt |
200 |
Q |
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| T |
45698894 |
ttggggggagggtttggcagctaagatagtttgagaattcatttcttttctttt-gcaggctgaaatgatcttcttctctgccaaatcaaatattatatt |
45698796 |
T |
|
| Q |
201 |
atacatttcccgaaatgcaattagcttcaaacactgacaaccaagattcttcttcttc------agaaacccaacccatattgaagaatcacctctgtga |
294 |
Q |
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| T |
45698795 |
atacatttcccgaaatgcaattagcttcaaacactgacaaccaagattcttcttcttcttcttcagaaacccaacccatattgaagaatcacctctgtga |
45698696 |
T |
|
| Q |
295 |
aattattcctattcctgccaacgacgaagacgatgactacgacaatgagtcttctcgtcttcttgttgtaaatgctgatcacccacaatgccggatatgc |
394 |
Q |
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| T |
45698695 |
aattattcctattcctgccaacgacgaagacgatgactacgacaatgagtcttctcatcttcttgttgtaaatgctgatcacccacaatgccggatatgc |
45698596 |
T |
|
| Q |
395 |
cttgatcttggaggagaagacttaattgccccctgccattgcaaaggtacccaaaagtatgtccacagatcatgtctcgataattggaggtctaccaagg |
494 |
Q |
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| T |
45698595 |
cttgatcttggaggagaagacttaattgccccctgccattgcaaaggtacccaaaagtatgtccacagatcatgtctcgataattggaggtctaccaagg |
45698496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 584 - 807
Target Start/End: Complemental strand, 45698381 - 45698158
Alignment:
| Q |
584 |
tcactgtactgaatgcagagctctcttcataattcgaccaaatgtccctaaagatcgttggtggttgagattgaaatttcagtttcttgttgccagagat |
683 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45698381 |
tcactgtactgaatgcagagctctcttcataattcgaccaaatgtccctaaagatcgttggtggttgagattgaaatttcagtttcttgttgccagagat |
45698282 |
T |
|
| Q |
684 |
catgcattcattttcatcattgttcaactcgtatgtatcctctaggactctatataagcagatacattgtatgatttgatgagaatgtctgttaatttct |
783 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45698281 |
catgcattcattttcatcattgttcaactcgtatgtatcctctaggactctatttaagcatatacattgtatgatttgatgagaatgtctgttaatttct |
45698182 |
T |
|
| Q |
784 |
tttccttttctaattgcacaggtt |
807 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
45698181 |
tttccttttctaattgcacaggtt |
45698158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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