View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13686_low_11 (Length: 309)
Name: NF13686_low_11
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 7584827 - 7585103
Alignment:
| Q |
13 |
aatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgtgattgatttttgtnnnnnnnnta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7584827 |
aatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgtgattgatttttgtaaaaaaa-ta |
7584925 |
T |
|
| Q |
113 |
tcatctatttaaaacaataactattgaatattggcatatcataattaagaaatatttaaatttaaatggttttatcatttgtcattatattaatagtgta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7584926 |
tcatctatttaaaacaataactattgaatattggcatatcataattaagaaatatttaaatttaaatggttttatcatttgtcattatattaatagtgta |
7585025 |
T |
|
| Q |
213 |
ttaatgtcatttgatctttctgccaaaaaatgatggatacttataatagcttcaagatacacacaaaatagaaaaaca |
290 |
Q |
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| T |
7585026 |
ttaatgtcatttgatctttctgccaaaaaatgatggatacttgtaatagcttcaagatacacacaaaatagaaaaaca |
7585103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 7096335 - 7096130
Alignment:
| Q |
13 |
aatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgtgattgatttttgtnnnnnnnnta |
112 |
Q |
| |
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||||| |||| ||||||||||| |||||||| | |||||||||||||||| ||||||| ||||||| ||| ||||| ||||||||| | | |
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| T |
7096335 |
aatattcagccttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtatcagttgtggttgatttttctaattcttttt |
7096236 |
T |
|
| Q |
113 |
tcatctatttaaaa-caataactattgaatattggcatatcataattaagaaatatttaaatttaaatggttttatcatttgtcattatattaatagtgt |
211 |
Q |
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| T |
7096235 |
tcatctatttaaaaacaaaagctattgaacatcggcatatcataattaagaaatatttaaatttaaatgg-tttatcatttgtcat--taataatagtgc |
7096139 |
T |
|
| Q |
212 |
attaatgtc |
220 |
Q |
| |
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||||||||| |
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| T |
7096138 |
attaatgtc |
7096130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 17980483 - 17980251
Alignment:
| Q |
13 |
aatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgtgattgatttttgtnnnnnnnnta |
112 |
Q |
| |
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||||| |||||||||||||||| |||||||| | |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| | |
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| T |
17980483 |
aatattcagctttccatggatgatccaaatgttgaatcacataaaggtaacttaggctattctcaggtgtcatttgtggttgatttttgtaaaaaaaaaa |
17980384 |
T |
|
| Q |
113 |
tcatcta-tttaaaacaataactattgaatatt-ggcatatcataattaagaaatatttaaatttaaatggttttatcatttgtcattatattaatagtg |
210 |
Q |
| |
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||||||| |||||||||| || || |||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||| |||| |
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| T |
17980383 |
tcatctattttaaaacaaaaaatactgaaaattcagcatatgataattaagaaatatttaaatttaaatgg-tttatcatttgtcagta---taaaagtg |
17980288 |
T |
|
| Q |
211 |
tattaatgtcatttgatctttctgccaaaaaatgatg |
247 |
Q |
| |
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|||| ||||||||||| ||||||| ||||||||||| |
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| T |
17980287 |
cattattgtcatttgatttttctgcgaaaaaatgatg |
17980251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 9624388 - 9624431
Alignment:
| Q |
200 |
tattaatagtgtattaatgtcatttgatctttctgccaaaaaat |
243 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
9624388 |
tattaatagtgcattaatgtcatttgatctttctgccaaaaaat |
9624431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Original strand, 9623919 - 9623992
Alignment:
| Q |
113 |
tcatctatttaaaa-caataactattgaatattggcatatcataattaagaaa-tatttaaatttaaatggttt |
184 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||||||||||||| ||| || |||||||||||||||| |
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| T |
9623919 |
tcatctatttaaaaacaaaaactattgaacattggcatatcataattaaaaaattaaataaatttaaatggttt |
9623992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 9623626 - 9623702
Alignment:
| Q |
13 |
aatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgt |
89 |
Q |
| |
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||||| |||||||||||| | | |||||||| | |||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
9623626 |
aatattcagctttccatgcaggatccaaatgttgaatcacataaaggtaacctaggctaatctcaggtgtcagttgt |
9623702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 13612858 - 13612815
Alignment:
| Q |
200 |
tattaatagtgtattaatgtcatttgatctttctgccaaaaaat |
243 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13612858 |
tattaatagtgcattaatgtcatttgatctttctgccaaaaaat |
13612815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 13613326 - 13613253
Alignment:
| Q |
113 |
tcatctatttaaaa-caataactattgaatattggcatatcataattaagaaa-tatttaaatttaaatggttt |
184 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||||||||||||| ||| || |||||||||||||||| |
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| T |
13613326 |
tcatctatttaaaaacaaaaactattgaacattggcatatcataattaaaaaattaaataaatttaaatggttt |
13613253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 13613619 - 13613543
Alignment:
| Q |
13 |
aatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgt |
89 |
Q |
| |
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||||| |||||||||||| | | |||||||| | |||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
13613619 |
aatattcagctttccatgcaggatccaaatgttgaatcacataaaggtaacctaggctaatctcaggtgtcagttgt |
13613543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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