View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13686_low_12 (Length: 302)

Name: NF13686_low_12
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13686_low_12
NF13686_low_12
[»] chr5 (1 HSPs)
chr5 (10-280)||(40163007-40163274)
[»] chr3 (2 HSPs)
chr3 (10-115)||(53556560-53556664)
chr3 (10-86)||(43399784-43399860)
[»] chr8 (4 HSPs)
chr8 (10-115)||(38681421-38681526)
chr8 (10-115)||(38682674-38682779)
chr8 (16-89)||(16395901-16395973)
chr8 (119-226)||(42313489-42313594)
[»] chr1 (1 HSPs)
chr1 (119-226)||(41327135-41327242)
[»] chr6 (2 HSPs)
chr6 (119-226)||(20910243-20910349)
chr6 (119-226)||(20924691-20924797)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 40163007 - 40163274
Alignment:
Q  10 catcatcaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctcccc-cttatgatccacacacctc 108  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  40163007 catcaccaccgccaaccctctccccccatctatcggcggcgaccaccaaacttctccctcaatcctccgacgttctccccccttatgatccacacacctc 40163106  T
Q  109 ctcacacttcgcaccttttcaacaccaatcgctgcctctccctgtccatcgaatctccttcgaagcctatctctccctatattacagatatggagaatgc 208  Q
     |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  40163107 atcacacttcgcaccctttcaacaccaaccgctgcctctccctgtccatcgaatctccttcggagcctgtctctccctatattacagatatggagaatgc 40163206  T
Q  209 gtcggaacaatccatggcgacctatcacgaacgatggtaacagtgaggaaacctcaacgagtcggtaacaac 280  Q
    ||||||||||||||||||||||||||    ||||||||||||| ||||||||||||||||||||||||||||    
T  40163207 gtcggaacaatccatggcgacctatc----acgatggtaacagcgaggaaacctcaacgagtcggtaacaac 40163274  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 53556664 - 53556560
Alignment:
Q  10 catcatcaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctcccccttatgatccacacacctcc 109  Q
    ||||| ||||| |||||||| ||||| ||| |||||||||||||||||| | ||||||||||||||| ||||||||||||||| || |||||||| ||||    
T  53556664 catcaccaccggcaaccctctccccc-atccatcggcggcgaccaccaagcctctccctcaatccactgacgttctcccccttctgctccacacatctcc 53556566  T
Q  110 tcacac 115  Q
    ||||||    
T  53556565 tcacac 53556560  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 43399784 - 43399860
Alignment:
Q  10 catcatcaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctc 86  Q
    |||||| |||| |||||||| ||||||||| || ||||||||||||||| | ||||||| ||||||| |||||||||    
T  43399784 catcataaccggcaaccctctccccccatccattggcggcgaccaccaagcctctcccttaatccactgacgttctc 43399860  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 38681421 - 38681526
Alignment:
Q  10 catcatcaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctcccccttatgatccacacacctcc 109  Q
    ||||| ||||| |||||||| ||||||||| |||||||||||||||||| | |||||||||| ||||||| |||||||||| | || |||||| | ||||    
T  38681421 catcaccaccgtcaaccctctccccccatccatcggcggcgaccaccaagcctctccctcaagccaccgaggttctcccccctctgctccacatatctcc 38681520  T
Q  110 tcacac 115  Q
    ||||||    
T  38681521 tcacac 38681526  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 38682674 - 38682779
Alignment:
Q  10 catcatcaccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctcccccttatgatccacacacctcc 109  Q
    ||||| ||||| |||||||| ||||||||| |||||||||||||||||| | |||||||||| ||||||| |||||||||| | || |||||| | ||||    
T  38682674 catcaccaccgtcaaccctctccccccatccatcggcggcgaccaccaagcctctccctcaagccaccgaggttctcccccctctgctccacatatctcc 38682773  T
Q  110 tcacac 115  Q
    ||||||    
T  38682774 tcacac 38682779  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 16395901 - 16395973
Alignment:
Q  16 caccgccaaccctcgccccccatctatcggcggcgaccaccaaacttctccctcaatccaccgacgttctcccc 89  Q
    |||||||||||||| |||||  || ||||||||| |||||||||| ||| |||||||||| |||||||||||||    
T  16395901 caccgccaaccctctcccccattc-atcggcggcaaccaccaaacctctgcctcaatccatcgacgttctcccc 16395973  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 42313594 - 42313489
Alignment:
Q  119 gcaccttttcaacaccaatcgctgcctctccctgtccatcgaatctccttc-gaagcctatctctccctatattacagatatggagaatgcgtcggaaca 217  Q
    ||||| |||||||||||| ||| || ||| |||  ||||| |||||||||| ||| || | |||||||||| ||||| || ||||||||||  |||||||    
T  42313594 gcaccctttcaacaccaaacgccgcttctgcct--ccatcaaatctccttcagaacccga-ctctccctatgttacatatttggagaatgcaccggaaca 42313498  T
Q  218 atccatggc 226  Q
    |||||||||    
T  42313497 atccatggc 42313489  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 41327242 - 41327135
Alignment:
Q  119 gcaccttttcaacaccaatcgctgcctctccctgtccatcgaatctccttc-gaagcctatctctccctatattacagatatggagaatgcgtcggaaca 217  Q
    ||||| |||||||||||| ||| || ||| ||| ||||||||||||||||| ||| || | |||||||||| ||||| || ||| ||||||| |||||||    
T  41327242 gcaccctttcaacaccaaacgccgcttctacctctccatcgaatctccttcagaacccga-ctctccctatgttacatatttggggaatgcgccggaaca 41327144  T
Q  218 atccatggc 226  Q
    |||||||||    
T  41327143 atccatggc 41327135  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 20910349 - 20910243
Alignment:
Q  119 gcaccttttcaacaccaatcgctgcctctccctgtccatcgaatctccttc-gaagcctatctctccctatattacagatatggagaatgcgtcggaaca 217  Q
    ||||| |||||||||||| ||| |  ||| ||| ||||||||||||||||| ||| || | |||||||||| |||||||| | | ||||||| |||||||    
T  20910349 gcaccctttcaacaccaaacgccgt-tctacctctccatcgaatctccttcagaacccga-ctctccctatgttacagattttgggaatgcgccggaaca 20910252  T
Q  218 atccatggc 226  Q
    |||||||||    
T  20910251 atccatggc 20910243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 20924797 - 20924691
Alignment:
Q  119 gcaccttttcaacaccaatcgctgcctctccctgtccatcgaatctccttc-gaagcctatctctccctatattacagatatggagaatgcgtcggaaca 217  Q
    ||||| |||||||||||| ||| |  ||| ||| ||||||||||||||||| ||| || | |||||||||| |||||||| | | ||||||| |||||||    
T  20924797 gcaccctttcaacaccaaacgccgt-tctacctctccatcgaatctccttcagaacccga-ctctccctatgttacagattttgggaatgcgccggaaca 20924700  T
Q  218 atccatggc 226  Q
    |||||||||    
T  20924699 atccatggc 20924691  T

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