View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13686_low_15 (Length: 276)
Name: NF13686_low_15
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_low_15 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 22383330 - 22383088
Alignment:
| Q |
1 |
ttgagtctaaacatgatttttacgcggaaacttattttgtttaacgtaaatgtatgaagacataaaccactttaagttcaaatcacttttaaataaaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22383330 |
ttgagtctaaacatgatttttacgcggaaacttatcttgtttaacgtaaatgtatgaagacataaaccactttaagttcaaatcacttttaaataaaatc |
22383231 |
T |
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| Q |
101 |
aatttcacaaaatcaatgcagatacaaacatgcactaactgaaaataaaaaacagagattaaaaagttgaaggagtactgaactaacttgatactgacac |
200 |
Q |
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| T |
22383230 |
aatttc----aatcactgtagaaacaaacatgcactaactgaaaataaaaaacagagattaaa----------agtactgaactaacttgatattgacac |
22383145 |
T |
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| Q |
201 |
cacctctgaacaagtaagcagtaacattctcataaacccaagaatcagcatccatag |
257 |
Q |
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| T |
22383144 |
cacctctgaacaagtaagcagtaacattctcataaacccaagaatcagcatccatag |
22383088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 13344840 - 13344897
Alignment:
| Q |
60 |
acataaaccactttaagttcaaatcacttttaaataaaatcaatttcacaaaatcaat |
117 |
Q |
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| T |
13344840 |
acataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaat |
13344897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 7632871 - 7632913
Alignment:
| Q |
63 |
taaaccactttaagttcaaatcacttttaaataaaatcaattt |
105 |
Q |
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| T |
7632871 |
taaaccactttaaattcaaatcacttttaactaaaatcaattt |
7632913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 1763272 - 1763329
Alignment:
| Q |
60 |
acataaaccactttaagttcaaatcacttttaaataaaatcaatttcacaaaatcaat |
117 |
Q |
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| T |
1763272 |
acataaatcactttaaattcaactcaattttaaccaaaatcaattttacaaaatcaat |
1763329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 12110926 - 12110983
Alignment:
| Q |
60 |
acataaaccactttaagttcaaatcacttttaaataaaatcaatttcacaaaatcaat |
117 |
Q |
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| T |
12110926 |
acataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaat |
12110983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 7169007 - 7169061
Alignment:
| Q |
63 |
taaaccactttaagttcaaatcacttttaaataaaatcaatttcacaaaatcaat |
117 |
Q |
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| T |
7169007 |
taaaccactttacattcaactcacttttaaccaaaatcaatttcaaaaaatcaat |
7169061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 15315 - 15258
Alignment:
| Q |
60 |
acataaaccactttaagttcaaatcacttttaaataaaatcaatttcacaaaatcaat |
117 |
Q |
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| T |
15315 |
acataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaat |
15258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 6988219 - 6988276
Alignment:
| Q |
60 |
acataaaccactttaagttcaaatcacttttaaataaaatcaatttcacaaaatcaat |
117 |
Q |
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| T |
6988219 |
acataaatcattttaaattcaacttacttttaattaaaatcaattttacaaaatcaat |
6988276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 46864337 - 46864394
Alignment:
| Q |
60 |
acataaaccactttaagttcaaatcacttttaaataaaatcaatttcacaaaatcaat |
117 |
Q |
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| T |
46864337 |
acataaaccactttatgttaaaatcacttttaaccaaaatcaattctgcaaaatcaat |
46864394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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