View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13686_low_17 (Length: 254)

Name: NF13686_low_17
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13686_low_17
NF13686_low_17
[»] chr1 (6 HSPs)
chr1 (17-254)||(22383324-22383561)
chr1 (146-244)||(7790699-7790796)
chr1 (140-185)||(6041617-6041662)
chr1 (194-251)||(35592475-35592532)
chr1 (143-223)||(9939805-9939885)
chr1 (177-249)||(50571246-50571317)
[»] chr4 (8 HSPs)
chr4 (152-254)||(33560617-33560719)
chr4 (140-254)||(11271584-11271699)
chr4 (160-244)||(25318992-25319076)
chr4 (140-220)||(2635088-2635168)
chr4 (140-218)||(26617709-26617787)
chr4 (138-183)||(31013850-31013895)
chr4 (177-249)||(31012791-31012862)
chr4 (140-180)||(50358134-50358174)
[»] chr6 (7 HSPs)
chr6 (140-226)||(33141781-33141867)
chr6 (140-251)||(33136533-33136643)
chr6 (140-226)||(6544573-6544659)
chr6 (140-223)||(25195441-25195524)
chr6 (140-226)||(30926853-30926939)
chr6 (140-173)||(7262996-7263029)
chr6 (140-173)||(29240579-29240612)
[»] chr3 (5 HSPs)
chr3 (140-254)||(48089435-48089549)
chr3 (196-254)||(7298363-7298421)
chr3 (140-185)||(52925726-52925771)
chr3 (142-182)||(41115170-41115210)
chr3 (159-251)||(43987601-43987693)
[»] chr8 (2 HSPs)
chr8 (140-223)||(4554259-4554342)
chr8 (159-254)||(11791780-11791875)
[»] chr7 (4 HSPs)
chr7 (160-223)||(45004965-45005028)
chr7 (155-223)||(40491518-40491586)
chr7 (158-249)||(41386867-41386957)
chr7 (140-207)||(45004910-45004977)
[»] chr2 (4 HSPs)
chr2 (140-254)||(33502895-33503009)
chr2 (142-249)||(2002747-2002853)
chr2 (140-173)||(37561632-37561665)
chr2 (149-249)||(36987163-36987263)
[»] chr5 (7 HSPs)
chr5 (145-254)||(42439664-42439773)
chr5 (140-226)||(10898647-10898733)
chr5 (147-249)||(14299262-14299363)
chr5 (140-226)||(29922819-29922905)
chr5 (142-251)||(1105366-1105475)
chr5 (140-201)||(3043103-3043164)
chr5 (140-225)||(10161751-10161836)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 22383561 - 22383324
Alignment:
Q  17 aatatgcgacacgaaagagtttcaaatagtacactagcatcacttcactaaaattaaagcacaaagtaaaataactgaaaaccgaatacttgcttatgtt 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  22383561 aatatgggacacgaaagagtttcaaatagtacactagcatcacttcactaaaattaaagcacaaagtaaaataactgaaaaccgaatagttgtttatgtt 22383462  T
Q  117 tcgttccactttggactctcgataattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaatt 216  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22383461 tcgttccactatggactctcgataattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaatt 22383362  T
Q  217 gattctaactgaaagttaggatttgtagtttttgagtc 254  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22383361 gattctaactgaaagttaggatttgtagtttttgagtc 22383324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 244
Target Start/End: Complemental strand, 7790796 - 7790699
Alignment:
Q  146 ttctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtag 244  Q
    ||||||| | |||||||||||| ||||| || |||||  |||| | |||||||||||||| ||| |||||||||||| |||  |||||| |||||||||    
T  7790796 ttctagaggggtaaaattgattgtgacatgcgtggttaatttcaagtataattgatattgtctttagaattgattct-acttgaagttatgatttgtag 7790699  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 6041617 - 6041662
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgct 185  Q
    ||||||||||||| |||||||||||||||||| | | |||||||||    
T  6041617 aattgattctagaggtgtaaaattgattttgatatgtttggttgct 6041662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 35592475 - 35592532
Alignment:
Q  194 taattgatattgacttcagaattgattctaactgaaagttaggatttgtagtttttga 251  Q
    |||||||| ||||||  |||||||||||||||| |||| |||||||| ||| ||||||    
T  35592475 taattgattttgactctagaattgattctaacttaaagctaggatttttagcttttga 35592532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 9939885 - 9939805
Alignment:
Q  143 tgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattcta 223  Q
    |||||||||| |||||||||| ||||||||| | |||||| || | || |||||||||| ||| |   |||||||||||||    
T  9939885 tgattctagaggtgtaaaattaattttgacatgtttggttcctctagagtataattgattttgcccctagaattgattcta 9939805  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 50571246 - 50571317
Alignment:
Q  177 ttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtagttttt 249  Q
    ||||||||| |||| |  ||||||| ||  |||||||||||||||||  |||| |||||||||||||||||||    
T  50571246 ttggttgctatcgatttaaattgattttatcttcagaattgattctacttgaa-gttaggatttgtagttttt 50571317  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 33560719 - 33560617
Alignment:
Q  152 aagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtagtttttga 251  Q
    |||||||| ||||||||||||| | ||||||||| |||| || ||||||| ||| ||  ||||||||||||||| ||||| |||||||||||| ||||||    
T  33560719 aagtgtaacattgattttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattctaaccgaaagctaggatttgtagcttttga 33560620  T
Q  252 gtc 254  Q
    |||    
T  33560619 gtc 33560617  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 11271699 - 11271584
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaat-ataattgatattgacttcagaattgattctaactgaaagttaggat 238  Q
    |||||||||| ||||||||||||||||||||||| |  |||||||| |||| |  || ||||| ||| || |||||||||||||||||  ||| ||||||    
T  11271699 aattgattctggaagtgtaaaattgattttgacaagtatggttgctgtcgagtggtatttgattttgcctccagaattgattctaacttgaagctaggat 11271600  T
Q  239 ttgtagtttttgagtc 254  Q
    |||||| |||||||||    
T  11271599 ttgtagcttttgagtc 11271584  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 25318992 - 25319076
Alignment:
Q  160 aattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtag 244  Q
    |||||||||||||| | ||||||||| |||| || ||||||| ||| || |||||||||||||||||  ||| ||||||||||||    
T  25318992 aattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtag 25319076  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 2635088 - 2635168
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgatt 220  Q
    |||||||||||||||||||||||||||||||||| | ||| |||||||  | || || |||| ||| || |||||||||||    
T  2635088 aattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaattgatt 2635168  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 26617787 - 26617709
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattga 218  Q
    ||||||||||||| |||||||||||||||||||| | |||| ||||||  |||| ||||||| ||| || || ||||||    
T  26617787 aattgattctagatgtgtaaaattgattttgacatgtttggatgcttttcaatagaattgattttgcctccataattga 26617709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 31013895 - 31013850
Alignment:
Q  138 ataattgattctagaagtgtaaaattgattttgacacgcttggttg 183  Q
    |||||||||| |||| |||||||||||||||||||| | |||||||    
T  31013895 ataattgattttagatgtgtaaaattgattttgacatgtttggttg 31013850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 31012862 - 31012791
Alignment:
Q  177 ttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtagttttt 249  Q
    ||||||||| |||| || || |||| |||| ||||||||||||||| ||| |||  |||||||||||||||||    
T  31012862 ttggttgctgtcgagtagaactgattttgatttcagaattgattct-actcaaaactaggatttgtagttttt 31012791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 50358174 - 50358134
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttgg 180  Q
    ||||||||||||| ||||| |||||||||||||| ||||||    
T  50358174 aattgattctagaggtgtagaattgattttgacatgcttgg 50358134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 33141867 - 33141781
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaact 226  Q
    |||||||||||| ||||||||||||||||||| | | ||||||||| || | |||||||||| ||  || |||||||||||||||||    
T  33141867 aattgattctagcagtgtaaaattgattttgatatgtttggttgctctcaagtataattgattttacctccagaattgattctaact 33141781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 251
Target Start/End: Complemental strand, 33136643 - 33136533
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatt 239  Q
    |||| |||||||| ||||| |||||||||||||| | ||||||||| |||| |||||||||| ||  || ||| |||||||| ||||| ||| ||| |||    
T  33136643 aattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgattttacctccag-attgattcgaactgtaagctagaatt 33136545  T
Q  240 tgtagtttttga 251  Q
    || || ||||||    
T  33136544 tgaaggttttga 33136533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 6544659 - 6544573
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaact 226  Q
    ||||||||||| | |||||||||| ||||||||| ||||   || |||| | || ||||||| ||| ||||||||||||||||||||    
T  6544659 aattgattctataggtgtaaaatttattttgacaagctttaatgttttcaagtaaaattgattttgccttcagaattgattctaact 6544573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 25195524 - 25195441
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattcta 223  Q
    |||||||||| || ||||| |||||||| ||||| | ||||||||| |||| ||||||||||  || || | ||||||||||||    
T  25195524 aattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataattgattctgcctccggaattgattcta 25195441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 30926939 - 30926853
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaact 226  Q
    ||||||||||||||||||| ||||| |||||||| | ||||| ||| |||| || ||||  | ||| ||| ||||| ||||||||||    
T  30926939 aattgattctagaagtgtataattgcttttgacatgtttggtcgctctcgagtagaattagttttggctttagaatggattctaact 30926853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 7262996 - 7263029
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgaca 173  Q
    ||||||||||||||||||| ||||||||||||||    
T  7262996 aattgattctagaagtgtagaattgattttgaca 7263029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 29240612 - 29240579
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgaca 173  Q
    ||||||||||||| ||||||||||||||||||||    
T  29240612 aattgattctagaggtgtaaaattgattttgaca 29240579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 48089549 - 48089435
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatt 239  Q
    |||||||| | |||||||||||||||||||| || | ||||||||| |||| ||||||| || ||| ||  ||||||||||| |||   ||| |||||||    
T  48089549 aattgattttggaagtgtaaaattgattttggcatgtttggttgctctcgagtataattaattttgcctcaagaattgattcaaaccttaagctaggatt 48089450  T
Q  240 tgtagtttttgagtc 254  Q
    ||| |||||||||||    
T  48089449 tgtcgtttttgagtc 48089435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 7298421 - 7298363
Alignment:
Q  196 attgatattgacttcagaattgattctaactgaaagttaggatttgtagtttttgagtc 254  Q
    |||||| ||| || |||||| ||||||||||  ||| ||||||||||||||||||||||    
T  7298421 attgatgttgtctccagaatcgattctaacttgaagctaggatttgtagtttttgagtc 7298363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 52925771 - 52925726
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgct 185  Q
    ||||||||||||| ||||| |||||||||||||| | |||||||||    
T  52925771 aattgattctagaggtgtataattgattttgacatgtttggttgct 52925726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 41115210 - 41115170
Alignment:
Q  142 ttgattctagaagtgtaaaattgattttgacacgcttggtt 182  Q
    ||||||||||||||| |||||||||||||||| | ||||||    
T  41115210 ttgattctagaagtgcaaaattgattttgacatgtttggtt 41115170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 43987693 - 43987601
Alignment:
Q  159 aaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtagtttttga 251  Q
    ||||||||||||||| | |||| || | | || || ||||||| ||| || ||||||  |||||||||| ||| ||| |||||||||||||||    
T  43987693 aaattgattttgacatgtttggatgttcttgagtacaattgattttgtctacagaatcaattctaactggaagctagaatttgtagtttttga 43987601  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 4554259 - 4554342
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattcta 223  Q
    ||||||||||||| |||||||||||||||||||||  || |||||| || | |||||||||| ||| ||  |||||||||||||    
T  4554259 aattgattctagaggtgtaaaattgattttgacacatttagttgctctctagtataattgattttgtctcaagaattgattcta 4554342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 11791875 - 11791780
Alignment:
Q  159 aaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtagtttttgagtc 254  Q
    |||||||||||| || | |||||||| || ||||||||||||  ||| || || || |||||||| ||  ||| |||||||||||| |||||||||    
T  11791875 aaattgattttggcatgtttggttgcctttgaatataattgaatttgcctccataactgattctaccttcaagctaggatttgtagcttttgagtc 11791780  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 45004965 - 45005028
Alignment:
Q  160 aattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattcta 223  Q
    |||||||||||||| | ||||||||| ||||||| ||||||| ||| |||||||||||||||||    
T  45004965 aattgattttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattcta 45005028  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 40491518 - 40491586
Alignment:
Q  155 tgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattcta 223  Q
    |||| |||||||| | ||| | ||||||||||||||| ||||||||| ||| |||||||||||| ||||    
T  40491518 tgtagaattgattctaacatggttggttgctttcgaagataattgattttgccttcagaattgactcta 40491586  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 249
Target Start/End: Complemental strand, 41386957 - 41386867
Alignment:
Q  158 aaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtagttttt 249  Q
    |||||||||| ||||| | ||| |||||||||| |||||||||| |   |||||||||||||||| |||  ||| |||||||||||| ||||    
T  41386957 aaaattgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattct-acttgaagctaggatttgtagctttt 41386867  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 45004910 - 45004977
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgac 207  Q
    ||||||||||||| ||||| |||||||||||||| | |||||| || || | |||||||||| |||||    
T  45004910 aattgattctagaggtgtagaattgattttgacatgtttggttactctctagtataattgattttgac 45004977  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 33503009 - 33502895
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatt 239  Q
    ||||||||||  | |||||||||||||||||||| | ||||||||| |||| || || |||| |||  | |||||||||||||||||  ||| ||| |||    
T  33503009 aattgattctgaaggtgtaaaattgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaatt 33502910  T
Q  240 tgtagtttttgagtc 254  Q
    |  ||||||||||||    
T  33502909 tcaagtttttgagtc 33502895  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 2002853 - 2002747
Alignment:
Q  142 ttgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttg 241  Q
    ||||||||||| | ||| ||||||| ||||||  ||||||||||||| | || ||||||| ||| || ||||  ||||||| |||  ||| |||||||||    
T  2002853 ttgattctagaggagtagaattgatgttgacatacttggttgctttctagtagaattgattttgcctccagacctgattct-acttgaagctaggatttg 2002755  T
Q  242 tagttttt 249  Q
    ||||||||    
T  2002754 tagttttt 2002747  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 37561632 - 37561665
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgaca 173  Q
    ||||||||||||| ||||||||||||||||||||    
T  37561632 aattgattctagaggtgtaaaattgattttgaca 37561665  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 36987263 - 36987163
Alignment:
Q  149 tagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtagtttt 248  Q
    ||||| |||| |||||||||||||| | |||| | |||| || |||||||||| |||  | ||||| |||||||||||  ||||||| |||| ||| |||    
T  36987263 tagaattgtagaattgattttgacatgtttggattcttttgagtataattgattttgcttccagaaatgattctaacttgaagttagaatttatagcttt 36987164  T
Q  249 t 249  Q
    |    
T  36987163 t 36987163  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 42439773 - 42439664
Alignment:
Q  145 attctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtag 244  Q
    |||| ||| |||||||||||||||||||||  ||||||||||  || || ||||||| ||  || |||||||||||||||||  ||| ||| || |||||    
T  42439773 attcaagaggtgtaaaattgattttgacacatttggttgcttgtgactagaattgatttttcctccagaattgattctaacttgaagctagaatctgtag 42439674  T
Q  245 tttttgagtc 254  Q
     |||||||||    
T  42439673 cttttgagtc 42439664  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 10898647 - 10898733
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaact 226  Q
    |||||||||||||  |||  |||| ||||||||| | ||||||||| |||| || ||||||| ||| ||  ||||||||||||||||    
T  10898647 aattgattctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaact 10898733  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 14299262 - 14299363
Alignment:
Q  147 tctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttgtagtt 246  Q
    |||||| ||||| |||||||| || ||   ||||||| ||||||||| ||||||| |||  || | |||||||||| |||  ||||||||||||||||||    
T  14299262 tctagaggtgtagaattgattctggcatatttggttgttttcgaataaaattgattttgcttttaaaattgattct-acttgaagttaggatttgtagtt 14299360  T
Q  247 ttt 249  Q
    |||    
T  14299361 ttt 14299363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 29922819 - 29922905
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaact 226  Q
    |||||||||||| |||||| |||||||||||||| | ||||||| | ||||  | ||||||| ||| ||  |||||||||| |||||    
T  29922819 aattgattctagtagtgtagaattgattttgacatgtttggttgttctcgagcagaattgattttgtctcaagaattgattttaact 29922905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 1105366 - 1105475
Alignment:
Q  142 ttgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttaggatttg 241  Q
    ||||||||||| ||||| ||||||||||||||   |||| || | || | || ||||||| |||  |||| |||||||| |||||  |||||| ||||||    
T  1105366 ttgattctagaggtgtataattgattttgacatttttggctgttctcaagtagaattgattttgctttcaaaattgattttaactcgaagttatgatttg 1105465  T
Q  242 tagtttttga 251  Q
    ||| ||||||    
T  1105466 tagcttttga 1105475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 3043164 - 3043103
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgat 201  Q
    ||||||||||||| ||||| |||||||||||||| | || |||||||  ||||| |||||||    
T  3043164 aattgattctagaggtgtagaattgattttgacatgtttagttgcttaagaatagaattgat 3043103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 10161751 - 10161836
Alignment:
Q  140 aattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaac 225  Q
    ||||||||||||| ||||| ||||||| |||||| | ||| ||| | ||||||| ||||||  ||| ||  |||||||||||||||    
T  10161751 aattgattctagatgtgtagaattgatcttgacatgtttgattgttctcgaatagaattgactttgcctctagaattgattctaac 10161836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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