View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13686_low_3 (Length: 484)
Name: NF13686_low_3
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 15450031 - 15450276
Alignment:
| Q |
14 |
attctcgtgttctaaggattgtgggataagtgcgacaattatgagtcaccgaagcctcccccatgatgtctcggacgattatcccttggtcattcactac |
113 |
Q |
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| T |
15450031 |
attctcgtgttctaaggattgtgggataggtgcgacagctatgagtcaacgaagcctcccccatgatgtctcggacgattgtcccttggtcattcgctac |
15450130 |
T |
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| Q |
114 |
tcttcccaacatcggggcctaaggttgtttatattcaataactttcggatggctgataaaggattacataatatggtcattctcaattaggcctccttgt |
213 |
Q |
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| T |
15450131 |
tcttcctaacatcggggcctaaggttgtttatattcaatatcttccggatggctgagaaaggattacataatatggtcattctcaattaggcctccttgt |
15450230 |
T |
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| Q |
214 |
aaactacaaggtggatggctcacattcttaaagagaagttaaaatt |
259 |
Q |
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| T |
15450231 |
aaactacaaggtggatggctcacattcttaaagagaagttaaaatt |
15450276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 256 - 474
Target Start/End: Original strand, 15450646 - 15450864
Alignment:
| Q |
256 |
aattccatcctagttcccttcttggatctcttcataagttcgtgacaatgttgttggatggtaggaattatggataaaattatttaaaccaatcagtaaa |
355 |
Q |
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| T |
15450646 |
aattccatcctagttcccttcttggatctcttcataagttcgtgacaatgttgtttgatgttaggaattatggataaaattatttaaaccaatcagtaaa |
15450745 |
T |
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| Q |
356 |
ctttaattaaggggaggtatctggttgatggagtggtcgttgttatgaattcattgacctggctcaaaattctaggagggtgtatctgatttttaaggtg |
455 |
Q |
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| T |
15450746 |
ctttaattagggggaggtatctggttgatggagtggtcgttgttctgaattcattgacctggctcgaaattctaggagggtgtatatgatttttaaggtg |
15450845 |
T |
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| Q |
456 |
gaatgcgaaaaggcctatg |
474 |
Q |
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| T |
15450846 |
gaattcgaaaaggcctatg |
15450864 |
T |
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