View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13686_low_4 (Length: 459)
Name: NF13686_low_4
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 4303059 - 4302639
Alignment:
| Q |
19 |
tcactgtgcaatgtaccaacaatagcagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4303059 |
tcactgtgcaatgtaccaacaatagcagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataa |
4302960 |
T |
|
| Q |
119 |
gaatgaatgaaaccaacacagttgacgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaag-tttaataacatgcag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
4302959 |
gaatgaatgaaaccaacacagttgacgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcag |
4302860 |
T |
|
| Q |
218 |
aacaccaaatggtgagagtaccctttgtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataa |
317 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302859 |
aacaccaaatggtgagagtacccttagtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataa |
4302760 |
T |
|
| Q |
318 |
tattgatcaagagtggaggctttgtttatcaagaaactgacataatagcatttcacatagacattacttccatgtttctcatccaccactatttttccat |
417 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
4302759 |
tattgatcaagagtggaggctttgtttatcaagaaactgacataatagcatttcacatagacattacttccatgtttctcatccaccaccatttttccat |
4302660 |
T |
|
| Q |
418 |
cagttgatccattgtcactag |
438 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
4302659 |
cagttgatccattgtcactag |
4302639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 66 - 365
Target Start/End: Complemental strand, 31635698 - 31635399
Alignment:
| Q |
66 |
ataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttatttgagag |
165 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
31635698 |
ataagttagagcaccgttaagtgatgcctgatcattttgtacttgaagtataagaataaatgaaaccaacaca-tagacgaatccccttttatttgagag |
31635600 |
T |
|
| Q |
166 |
aataaccaatatcctttttcatgaaatccaagtaaag-tttaataacatgcagaacaccaaatggtgagagtaccctttgtataatgtttcttggttcca |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
31635599 |
aataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcagaacaccaaatggtgagagtacccttggtataatgtttcttggttcca |
31635500 |
T |
|
| Q |
265 |
ctttatataagcctttaataaagcttaaaaatacattcacaagatatgcataatattgatcaagagtggaggctttgtttatcaagaaactgacataata |
364 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31635499 |
ctttatataagcctttaataaagcttaaaaatacattcacaagatatgcataatattgatcaagagtggaggctttgtttatcaagaaactgacataata |
31635400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 35681859 - 35681518
Alignment:
| Q |
20 |
cactgtgcaatgtaccaacaatagcagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataag |
119 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
35681859 |
cactgagcaaggtaccaacaatagcagactcacttgataattctgtataagttagagtactgttaagtgatgcctgatcattttgtacttgaagtgtaag |
35681760 |
T |
|
| Q |
120 |
aatgaatgaaaccaacacagttgacgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacat---gc |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||| || |
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|
| T |
35681759 |
aatgaatgaaaccaacacagtaaacgaatccctttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagc |
35681660 |
T |
|
| Q |
216 |
agaacaccaaatggtgagagtaccctttgtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcat |
315 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||| |
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|
| T |
35681659 |
agaacaccaaatggtgagagtacccttagtctaacgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataaaatatgcat |
35681560 |
T |
|
| Q |
316 |
aatattgatcaagagtggaggctttgtttatcaagaaactga |
357 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
35681559 |
aatattgatcatgagtggaggttttgtttatcaagaaactga |
35681518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 31635936 - 31635882
Alignment:
| Q |
20 |
cactgtgcaatgtaccaacaatagcagaatcacttgataattctatataagttag |
74 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31635936 |
cactgtgcaatgtaccaacaatagcagactcacttgataattctatataagttag |
31635882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 421
Target Start/End: Complemental strand, 6960722 - 6960686
Alignment:
| Q |
385 |
ttccatgtttctcatccaccactatttttccatcagt |
421 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
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|
| T |
6960722 |
ttccatatttctcatccaccaccatttttccatcagt |
6960686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 421
Target Start/End: Complemental strand, 6968117 - 6968081
Alignment:
| Q |
385 |
ttccatgtttctcatccaccactatttttccatcagt |
421 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
6968117 |
ttccatatttctcatccaccaccatttttccatcagt |
6968081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 37192956 - 37192582
Alignment:
| Q |
20 |
cactgtgcaatgtaccaacaatagcagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataag |
119 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||| | ||| |||||||||||||||| | |
|
|
| T |
37192956 |
cactgagcaatgtaccaacaattgcagacgcacttgataattctatacaagctagagcattgttaagtgatgcctgaccatgttgtacttgaagtatagg |
37192857 |
T |
|
| Q |
120 |
aatgaatgaaaccaacacagttgacgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaag-tttaataacatgcaga |
218 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
37192856 |
aatgaatgaaaccaacacagtaagtggatccctttttatttgagagaataaccaatatcctttttcatgaagtccaagtaaaggtttaataacatgcaga |
37192757 |
T |
|
| Q |
219 |
acaccaaatggtgagagtaccctttgta----taatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgca |
314 |
Q |
| |
|
||| |||||||||||||||||||| || ||| |||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
37192756 |
acatcaaatggtgagagtacccttagttagtctaacgtttcttggtcccacttcatataagcctttaataaagcttaaaaatgcattcataagatatgca |
37192657 |
T |
|
| Q |
315 |
taatattgatcaagagtggaggctttgtttatcaagaaactgacataatagcatttcacatagacattacttcca |
389 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
37192656 |
taatattgatcaagagtagaagctttgtttttcaagaaactgacataataggattgcacagagacattacttcca |
37192582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 49111971 - 49112024
Alignment:
| Q |
385 |
ttccatgtttctcatccaccactatttttccatcagttgatccattgtcactag |
438 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||| || || |||||| |
|
|
| T |
49111971 |
ttccatgtttctcatctaccactatttttccatcagtggattcaatgccactag |
49112024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 49100155 - 49100208
Alignment:
| Q |
385 |
ttccatgtttctcatccaccactatttttccatcagttgatccattgtcactag |
438 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||||||||| || || |||||| |
|
|
| T |
49100155 |
ttccatttttctcatccaccaccatttttccgtcagttgattcaatgccactag |
49100208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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