View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13686_low_6 (Length: 383)
Name: NF13686_low_6
Description: NF13686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13686_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 30393725 - 30393359
Alignment:
| Q |
1 |
tcaccatcacaatccatctatcaatgtgtcatgcaaaatttcccttcataatctcatttttatagctattagcaacaacaggttttggttttcttagttt |
100 |
Q |
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| T |
30393725 |
tcaccatcacaatccatctatcaatgtgtcatgcaaaatttcccttcataatctcatttttatagctattagaaacaacaggttttggttttcttagttt |
30393626 |
T |
|
| Q |
101 |
tggaaggtctttagccaattattgtcattttaaattttctagatactcattgaaacaaactctagtgtctttatataaattccataccaacattttgtta |
200 |
Q |
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| T |
30393625 |
tggaaggtctttagccaattattgtcattttaaattttctagatactcattgaaacaaactctagtgtctttatataaattccataccaacattttgtta |
30393526 |
T |
|
| Q |
201 |
ctagttcttggtatggtaggttaatctcttttgtcatatcattgttgttgtttaaaatgccttgtgtattttttgaaacaattgaacaaagtatggtgtt |
300 |
Q |
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| T |
30393525 |
ctagttcttggtatggtaggttaatctcttttgtcatatcattgttgttgtttaaaatgccttgtgtattttttgaaacaattgaacaaagtatggtgtt |
30393426 |
T |
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| Q |
301 |
cttcgcataccagtacttgtaacaagttattggtaggtgattctgttactttaataaaatctatatt |
367 |
Q |
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| T |
30393425 |
cttcgcataccagtacttgtaactagttattggtaggtgattctgttactttaataaaatctatatt |
30393359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 30407319 - 30407125
Alignment:
| Q |
1 |
tcaccatcacaatccatctatcaatgtgtcatgcaaaatttcccttcataatctcatttttatagctattagcaacaacaggttttggttttcttagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407319 |
tcaccatcacaatccatctatcaatgtgtcatgcaaaatttcccttcataatctcatttttatagctattagcaacaacaggttttggttttcttagttt |
30407220 |
T |
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| Q |
101 |
tggaaggtctttagccaattattgtcattttaaattttctagatactcattgaaacaaactctagtgtctttatataaattccataccaacattttg |
197 |
Q |
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| T |
30407219 |
tggaaggtctttagccaatcattatcattttaaattttctagatactcattgaaac--acactagtgtctttatacaatttccataccaatattttg |
30407125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 30407080 - 30407044
Alignment:
| Q |
315 |
acttgtaacaagttattggtaggtgattctgttactt |
351 |
Q |
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||||||||| |||||||||||||||||| |||||||| |
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| T |
30407080 |
acttgtaactagttattggtaggtgattttgttactt |
30407044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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