View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13687_low_1 (Length: 569)
Name: NF13687_low_1
Description: NF13687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13687_low_1 |
 | |
|
| [»] scaffold0003 (3 HSPs) |
| | |
|
| [»] scaffold0884 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 8359509 - 8360072
Alignment:
| Q |
1 |
caattgaaacaagagcaagagagnnnnnnncagatctagaaattggaagtgaagttgagaaacctaaccgaacaatgaaggtaaagtcgaaatcggagag |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8359509 |
caattggaacaagagcaagagaggaaaaaacagatctagaaattggaagtgaagttgagaaacctaaccgaacaatgaaggtaaaatcgaaatcggagag |
8359608 |
T |
|
| Q |
101 |
gcaccgtatatggccgcgagaaccaccgtaagagatgagaattccgtcgtaagagtgaacatagaaaaagggattgggggatggtgtttgggtgttgtgt |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8359609 |
gcatcgtatatggccgcgagaaccaccgtaagagatgagaattgcgccgtaggagtgaacatagaaaaagggattgggggatggtgtttgggtgttgtgt |
8359708 |
T |
|
| Q |
201 |
tgagtgatgaagcgatgtagagtatgagatc----atatgtgaaaatggcgatggatctgaggtcagggttcttgttcgacggccagtgtgagaggtgag |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8359709 |
tgagtgatgaagcgatgtagagtatgagatatatgatctgtgaaaatggcaatggatctgaggtcagggttcttgttcgacggccagtgtgagaggtgtg |
8359808 |
T |
|
| Q |
297 |
agagnnnnnnnnnntctgagaattgtgttttacgaggagaggccaaaggaaaatagtgttaaattggttttcccctcatgtgtttttctccgctgatgta |
396 |
Q |
| |
|
|| | ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8359809 |
agcg--aaaaaaaatctaagaattgtgttttacgaggagaggccaaaggaaaatagtgataaattggttttcccctcatgtgtttttctccactgatgta |
8359906 |
T |
|
| Q |
397 |
aaataccaaatttactcaaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattccc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8359907 |
aaataccaaatttactcaaattgcgaaaatgccaccgcgtgtttttcccctcatttcaattatccactgatgtaaatgttatatgctattaggaattccc |
8360006 |
T |
|
| Q |
497 |
ctcatgtgcttatgtcaactgatgtaaaaactcacagtgtgtatctttttcttcagatattcttcg |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
8360007 |
ctcatgtgcttatgtcaactgatgtaaaaactcacagtgtgtatattttccttcagatatttttcg |
8360072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 412 - 557
Target Start/End: Original strand, 27095430 - 27095575
Alignment:
| Q |
412 |
tcaaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgt |
511 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27095430 |
tcaaattgcaaaaatgccaccgcgtgtttttcccttcatttcaactatgcactgatgtaaatgttatatgctattaggaattcccttcatgtgcttatgt |
27095529 |
T |
|
| Q |
512 |
caactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
27095530 |
caactgatgtaaaagttcacagtgtgtatctttccctttagatatt |
27095575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 413 - 557
Target Start/End: Original strand, 7692826 - 7692970
Alignment:
| Q |
413 |
caaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtc |
512 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
7692826 |
caaattgcgaaaatgccaccacgtgttttttccttcatttcagttatccactgatgtaaatgccatatgctattaggaattcccttcatgtatttatgtc |
7692925 |
T |
|
| Q |
513 |
aactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
7692926 |
aactgatgtaaaaactcacagtgtgtatctttctcttcagttatt |
7692970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 413 - 557
Target Start/End: Original strand, 19793428 - 19793572
Alignment:
| Q |
413 |
caaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtc |
512 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
19793428 |
caaattgcgaaaatgccaccgtgtgtttttcccttcatttcagttatccactgatgtaaatgccatatgctatttggaattcccttcatgtgtttatgtc |
19793527 |
T |
|
| Q |
513 |
aactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
19793528 |
aactaatgtaaaaactcacagtgtgtatctttctcttcagttatt |
19793572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 412 - 557
Target Start/End: Original strand, 13806774 - 13806919
Alignment:
| Q |
412 |
tcaaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgt |
511 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||| || ||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13806774 |
tcaaattgcaaaaatgccaccgcgtgttttttccttcatttcaactattcgctgatgtaaatgttatatgctattaggaattcccttcatgtgcttatgt |
13806873 |
T |
|
| Q |
512 |
caactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
13806874 |
caactgatgtaaaagttcacagtgtgtatctttccctttagatatt |
13806919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 420 - 557
Target Start/End: Original strand, 38459306 - 38459443
Alignment:
| Q |
420 |
cgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtcaactgat |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||| |
|
|
| T |
38459306 |
cgaaaatgccaccgcgtgtttttcccttcaattcaactatgcactgatgtaaatgttatatgctattaggaatttccttcatgtgtttatgccaactgat |
38459405 |
T |
|
| Q |
520 |
gtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
38459406 |
gtaaaaactcactgtgtgtatcttttccatcagatatt |
38459443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 509
Target Start/End: Complemental strand, 36246649 - 36246552
Alignment:
| Q |
414 |
aaattgcgaaaatgccaccgcg-tgtttttcccttcattttaattatccactgatgt-aaatgttatatgctattaggaattcccctcatgtgcttat |
509 |
Q |
| |
|
||||||| ||||||||||||| | |||||||| |||||| ||||||||||||| || |||||||||||| ||||| ||||||||||| || ||||| |
|
|
| T |
36246649 |
aaattgcaaaaatgccaccgcactttttttcccctcatttcaattatccactgaagtgaaatgttatatgtcattagtaattcccctcaggtacttat |
36246552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 395
Target Start/End: Complemental strand, 36246750 - 36246687
Alignment:
| Q |
332 |
ggagaggccaaaggaaaatagtgttaaattggttttcccctcatgtgtttttctccgctgatgt |
395 |
Q |
| |
|
||||||| ||||||||||||||| || ||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
36246750 |
ggagaggtaaaaggaaaatagtgtaaatttgtttttcccctcaagtgtttttctccactgatgt |
36246687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 11769419 - 11769372
Alignment:
| Q |
162 |
tagaaaaagggattgggggatggtgtttgggtgttgtgttgagtgatga |
210 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
11769419 |
tagaaaaagggattgggg-atagtgtttgcgtgttgtgttgagtgatga |
11769372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 31 - 562
Target Start/End: Complemental strand, 39292065 - 39291533
Alignment:
| Q |
31 |
cagatctagaaattggaagtgaagttgagaaacctaaccgaacaatgaaggtaaagtcgaaatcggagaggcaccgtatatggccgcgagaaccaccgta |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39292065 |
cagatctagaaattggaagtgaagttgagaaatctaaccgaacaatgaaggtaaaatcgaaatcggagaagcaccgtatatggccgcgagaaccaccgta |
39291966 |
T |
|
| Q |
131 |
agagatgagaattccgtcgtaagagtgaacatagaaaaagggattgggggatggtgtttgggtgttgtgttgagtgatgaagcgatgtagagtatgagat |
230 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39291965 |
agagatgagaattgcgccgtaagagtgaacatagaaaaagggattggggcatggtgtttgggtgttgtgttgagtgatgaagtgatgtagagtatgagat |
39291866 |
T |
|
| Q |
231 |
c----atatgtgaaaatggcgatggatctgaggtcagggttcttgttcgacggccagtgtgagaggtgagagagnnnnnnnnnntctgagaattgtgttt |
326 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39291865 |
atatgatctgtgaaaatggcgatggaactgaggtcagggttcttgattgacggccagtgtgagaggtgagagagaaaaaaaat---tgagaattgtgttt |
39291769 |
T |
|
| Q |
327 |
tacgaggagaggccaaaggaaaatagtgttaaattggttttcccctcatgtgtttttctccgctgatgtaaaataccaaatttactcaaattgcgaaaat |
426 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39291768 |
tacgaggagaggccaaaggaaaatagtgataaattggttttcccctcatgtgtttttctccactcatgtaaaataccaaatttactcaaattgcgaaaat |
39291669 |
T |
|
| Q |
427 |
gccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtcaactgatgtaaaaa |
526 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39291668 |
gccaccgcgtgtttttcccctcatttcaattatccactgatgtaaattttatatgctattaagaattcccctcatgtgcttatgtcaactgatgtaaaaa |
39291569 |
T |
|
| Q |
527 |
ctcacagtgtgtatctttttcttcagatattcttcg |
562 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
39291568 |
ctcacagtgtgtatcttttccttcagaaatttttcg |
39291533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 314 - 562
Target Start/End: Original strand, 7423966 - 7424209
Alignment:
| Q |
314 |
gagaattgtgttttacgaggagaggccaaaggaaaatagtgttaaattggttttcccctcatgtgtttttctccgctgatgtaaaataccaaatttactc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||| ||| |
|
|
| T |
7423966 |
gagaattgtgttttacgaggagaggccaaaggaaaatagtgataaattggttttcccctcatgt-----tctccactgatgtaaaatacaaaattttctc |
7424060 |
T |
|
| Q |
414 |
aaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtca |
513 |
Q |
| |
|
|||||||||||||||||| |||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7424061 |
aaattgcgaaaatgccactgcgtgttttttccctcatttcaattatctactgatgtaaatgttatatgctattaggaattcccctcatgtggttatgtca |
7424160 |
T |
|
| Q |
514 |
actgatgtaaaaactcacagtgtgtatctttttcttcagatattcttcg |
562 |
Q |
| |
|
| | |||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
7424161 |
attaatgtaaaaactcacagtgtgtatcttttctttcagatatttttcg |
7424209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 414 - 562
Target Start/End: Original strand, 9010493 - 9010641
Alignment:
| Q |
414 |
aaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtca |
513 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
9010493 |
aaattgcaaaaatgccaccgcgtttttttcccttcatttcaacactccactgatgtaaatgttatatgctattaggaattcccttcatgtacttatgtca |
9010592 |
T |
|
| Q |
514 |
actgatgtaaaaactcacagtgtgtatctttttcttcagatattcttcg |
562 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||||| ||||| |||| |
|
|
| T |
9010593 |
actgatgtaaaaactaacagcgtgtatctttcccttcaaatatttttcg |
9010641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 12706200 - 12706161
Alignment:
| Q |
32 |
agatctagaaattggaagtgaagttgagaaacctaaccga |
71 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
12706200 |
agatctagaaattggaagtgaagtagagaaaactaaccga |
12706161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 6e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 411 - 557
Target Start/End: Original strand, 21875940 - 21876086
Alignment:
| Q |
411 |
ctcaaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21875940 |
ctcaaattgcgaaaatgccaccgcgtgtttttcccctcatttcaatcattcactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatg |
21876039 |
T |
|
| Q |
511 |
tcaactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21876040 |
tcaactgatgtaaaaactcacagtgtgtatctttcccttcagatatt |
21876086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 414 - 562
Target Start/End: Complemental strand, 6183558 - 6183411
Alignment:
| Q |
414 |
aaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtca |
513 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| ||||||| || |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
6183558 |
aaattgcaaaaatgccaccgcgtttttttcc-ttcatttcaacactccactgatgtaaatgttatatgctattaggatttcccttcatgcacttatgtca |
6183460 |
T |
|
| Q |
514 |
actgatgtaaaaactcacagtgtgtatctttttcttcagatattcttcg |
562 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |||| |||| |
|
|
| T |
6183459 |
actgatgtaaaaactaacagtgtgtatctttcccttcaggtatttttcg |
6183411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 414 - 557
Target Start/End: Complemental strand, 24475533 - 24475390
Alignment:
| Q |
414 |
aaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtca |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
24475533 |
aaattgcgaaaatgccaccgcgtgtttttcccctcatttcaattatccactgatgtaaatgttctatgctattaggaattcccttcagatgcttatgtca |
24475434 |
T |
|
| Q |
514 |
actgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24475433 |
actgatgtaaaaactcacagtgtgtatctttctcttcagatatt |
24475390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 413 - 557
Target Start/End: Original strand, 12464612 - 12464756
Alignment:
| Q |
413 |
caaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
12464612 |
caaattgcgaaaatgccaccgcgtgtttttcccttcatttcagttatccactgatgtaaatgccatatgctattaggaattcccttcatgtgtttatgtc |
12464711 |
T |
|
| Q |
513 |
aactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
12464712 |
aactgatgtaaaaactcacactgtgtatctttctcttcagttatt |
12464756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 6338187 - 6338269
Alignment:
| Q |
414 |
aaattgcgaaaatgccaccgcgtgtttttccct-tcattttaattatccactgatgt-aaatgttatatgctattaggaattc |
494 |
Q |
| |
|
|||||| |||||||| ||| ||| |||||||| |||| | ||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
6338187 |
aaattgtgaaaatgctaccacgtttttttccccctcatctcaattatctactgatgtgaaatgttatatgttattaggaattc |
6338269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 509
Target Start/End: Original strand, 19181304 - 19181401
Alignment:
| Q |
414 |
aaattgcgaaaatgccaccgcgtgtttttccct-tcattttaattatccactgatgt-aaatgttatatgctattaggaattcccctcatgtgcttat |
509 |
Q |
| |
|
|||||||||||| |||||| || |||||||| |||||| ||||||||||||| || |||||||||||| ||||| |||||| |||| || ||||| |
|
|
| T |
19181304 |
aaattgcgaaaacgccaccccgcttttttccccctcatttcaattatccactgaagtgaaatgttatatgtcattagtaattcctctcaggtacttat |
19181401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 413 - 557
Target Start/End: Complemental strand, 8777700 - 8777556
Alignment:
| Q |
413 |
caaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtc |
512 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
8777700 |
caaattgcaaaaatgccaccgcgtgtttttcccttcattccagttatccactgatgtaaatgtcatatgctattaggaattcccttcatgtgtttatgtc |
8777601 |
T |
|
| Q |
513 |
aactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
8777600 |
aactgatgtaaaaactcacagtgtgtatctttctcttcagttatt |
8777556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 410 - 562
Target Start/End: Complemental strand, 4876508 - 4876356
Alignment:
| Q |
410 |
actcaaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttat |
509 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
4876508 |
actcaaattgcgaaaatgccaccgcgttttttccccctcatttcaacactccactgatgtaaatgttatattctattaggaatttccctcatgtgcttat |
4876409 |
T |
|
| Q |
510 |
gtcaactgatgtaaaaactcacagtgtgtatctttttcttcagatattcttcg |
562 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| |||||| |||| |
|
|
| T |
4876408 |
gtcaactgatgtaaaaactcacagtgtatatctttctcttctgatatttttcg |
4876356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 413 - 557
Target Start/End: Complemental strand, 31189247 - 31189103
Alignment:
| Q |
413 |
caaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtc |
512 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| || |
|
|
| T |
31189247 |
caaattgcaaatatgccaccgcgtttttttcccttcatttcaattatccactgatgtaaatgttatatgttattagcaattcccctcatgtacttatatc |
31189148 |
T |
|
| Q |
513 |
aactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| |||| |
|
|
| T |
31189147 |
aactgatgtaaaaactcacagcatgtatctttcccttcaggtatt |
31189103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 414 - 544
Target Start/End: Complemental strand, 21527350 - 21527220
Alignment:
| Q |
414 |
aaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtca |
513 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
21527350 |
aaattgcaaaaatgccaccgcgtgtttttcccttcatttcaattatgtacttatgtaaatattatatgctattaggaattcccttaatgtgtttatgtca |
21527251 |
T |
|
| Q |
514 |
actgatgtaaaaactcacagtgtgtatcttt |
544 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
21527250 |
actgatgtaaaaactcatagtgtgtatcttt |
21527220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 410 - 544
Target Start/End: Complemental strand, 26133946 - 26133811
Alignment:
| Q |
410 |
actcaaattgcgaaaatgccaccgcgtgttttt-cccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgctta |
508 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
26133946 |
actcaaattgcgaaaatgccgccgcgttttttttcccctcatttcaactatccactgatgtaaatgttatatgctattaggaattcgcctcacctactta |
26133847 |
T |
|
| Q |
509 |
tgtcaactgatgtaaaaactcacagtgtgtatcttt |
544 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |
|
|
| T |
26133846 |
tgtcaactgatgtaaaaattcaccgtgtgtatcttt |
26133811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 414 - 512
Target Start/End: Complemental strand, 51741642 - 51741543
Alignment:
| Q |
414 |
aaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgt-aaatgttatatgctattaggaattcccctcatgtgcttatgtc |
512 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||| |||||||||||||||| ||| |||| ||||||||| | ||||| ||| || |||||||| |
|
|
| T |
51741642 |
aaattgcgaaaatgccaccgcatttttttcccctcatttcaattatccactgatgtgaaacgttacatgctattactatttcccttcaggtacttatgtc |
51741543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 410 - 557
Target Start/End: Complemental strand, 17841 - 17694
Alignment:
| Q |
410 |
actcaaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttat |
509 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17841 |
actcaaattgcaaaaatgccaccgcgtgtctttcccctcatttcaataatccactgatgtaaatgttatatgctacaaggaattcccctcatgtgcttat |
17742 |
T |
|
| Q |
510 |
gtcaactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
17741 |
gtcaactgatgtaaaaactcatagtgtgtatctttcccttcagttatt |
17694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 410 - 557
Target Start/End: Complemental strand, 31987 - 31840
Alignment:
| Q |
410 |
actcaaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttat |
509 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
31987 |
actcaaattgcaaaaatgccaccgcgtgtctttcccctcatttcaataatccactgatgtaaatgttatatgctacaaggaatttccctcatgtgcttat |
31888 |
T |
|
| Q |
510 |
gtcaactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
31887 |
gtcaactgatgtaaaaactcatagtgtgtatctttcccttcagttatt |
31840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 410 - 557
Target Start/End: Complemental strand, 38184 - 38037
Alignment:
| Q |
410 |
actcaaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttat |
509 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
38184 |
actcaaattgcaaaaatgccaccgcgtgtctttcccctcatttcaataatccactgatgtaaatgttatatgctacaaggaattaccctcatgtgcttat |
38085 |
T |
|
| Q |
510 |
gtcaactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
38084 |
gtcaactgatgtaaaaactcatagtgtgtatctttcccttcagttatt |
38037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 410 - 557
Target Start/End: Complemental strand, 16429128 - 16428981
Alignment:
| Q |
410 |
actcaaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttat |
509 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16429128 |
actcaaattgcaaaaatgccaccgcgtgtctttcccctcatttcaataatccactgatgtaaatgttatatgctacaaggaattcccctcatgtgcttat |
16429029 |
T |
|
| Q |
510 |
gtcaactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
16429028 |
gtcaactgatgtaaaaactcatagtgtgtatctttcccttcagttatt |
16428981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 415 - 557
Target Start/End: Original strand, 31132191 - 31132333
Alignment:
| Q |
415 |
aattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtcaa |
514 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
31132191 |
aattgcgaaaatgccaccgcgagtttttcccatcatttcaattatccactgatgtaaatgttatatgctattaagaatttccctcatatgcttatgtcaa |
31132290 |
T |
|
| Q |
515 |
ctgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
||||||||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
31132291 |
ctgatgtaaaatctcacactgtgtatctttcccttcagatatt |
31132333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0884 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0884
Description:
Target: scaffold0884; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 414 - 562
Target Start/End: Original strand, 492 - 640
Alignment:
| Q |
414 |
aaattgcgaaaatgccaccgcgtgtttttcccttcattttaattatccactgatgtaaatgttatatgctattaggaattcccctcatgtgcttatgtca |
513 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
492 |
aaattgcaaaaatgccaccgcgtttttttcccttcatttcaatactccactgatgtaaatgttatatgctattaggatttcccttcatgcacttatgtca |
591 |
T |
|
| Q |
514 |
actgatgtaaaaactcacagtgtgtatctttttcttcagatattcttcg |
562 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |||| |||| |
|
|
| T |
592 |
actgatgtaaaaactaacagtgtgtatctttcccttcaggtatttttcg |
640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 471 - 557
Target Start/End: Complemental strand, 84480 - 84394
Alignment:
| Q |
471 |
aatgttatatgctattaggaattcccctcatgtgcttatgtcaactgatgtaaaaactcacagtgtgtatctttttcttcagatatt |
557 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
84480 |
aatgttatatgctacaaagaattcccctcatgtgcttatgtcaactgatgtaaaaactcatagtgtgtatctttcccttcagatatt |
84394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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