View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13687_low_2 (Length: 559)
Name: NF13687_low_2
Description: NF13687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13687_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 20 - 553
Target Start/End: Complemental strand, 44842589 - 44842057
Alignment:
| Q |
20 |
ggtaatttgaaatatatgctccggtagaacattagaaaaagaaccgtgataatttgaaagtaaatgaagtttatatgagtatactgatgataagggatac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44842589 |
ggtaatttgaaatatatgctccggtagaacattagaaaaagaaccgtgataatttgaaagtaaatgaagtttatatgagtatactgatgataagggatac |
44842490 |
T |
|
| Q |
120 |
tgaacacatagaagagattagtttgatgagtgcaaagcagaaagccaaaaaactctagtagtattcccttgaatgatatctcttaatttgagttattctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44842489 |
tgaacacatagaagagattagtttgatgagtgcaaagcagaaagccaaaaaactctagtagtattcccttgaatgatatctcttaatttgagttattctt |
44842390 |
T |
|
| Q |
220 |
ataaaatagaatgcattatactctatgaaatcaaaaatagctttgataggaacaaagacattcgtcaagtgctaccaaagaaagtgatgtacgggggatc |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
44842389 |
ataaaatagaatgcattataccctatgaaatcaaaaatagctttgataggaacaaagacattcgtcaagtgctaccaaagaaagtgatgt-cggggggac |
44842291 |
T |
|
| Q |
320 |
ttatcgttggtggcgacatcgcagaagttgcaagggatgaagtattggctttgagaggaaaaaacagttatactcgttttctttgattttgaaaaaagag |
419 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44842290 |
ttatcgttggtggcgacatcacagaagttgcaagggatgaactattggctttgagaggaaaaaacagttatactcgttttctttgattttgaaaaaagag |
44842191 |
T |
|
| Q |
420 |
ggagaaaggagattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagtttt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44842190 |
ggagaaaggagattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccgaaggagtttt |
44842091 |
T |
|
| Q |
520 |
tgggtttattagactttagatgatgtccatctca |
553 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |
|
|
| T |
44842090 |
tgggtttattagactttagataatggacatctca |
44842057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University