View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13687_low_3 (Length: 525)

Name: NF13687_low_3
Description: NF13687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13687_low_3
NF13687_low_3
[»] chr7 (3 HSPs)
chr7 (244-505)||(24767589-24767855)
chr7 (86-129)||(30826511-30826554)
chr7 (85-128)||(35722547-35722590)
[»] chr6 (2 HSPs)
chr6 (13-240)||(24076016-24076230)
chr6 (39-69)||(5942532-5942562)
[»] chr3 (4 HSPs)
chr3 (328-465)||(48126935-48127077)
chr3 (241-300)||(48126877-48126936)
chr3 (33-67)||(55070189-55070223)
chr3 (252-317)||(42665646-42665710)
[»] chr2 (2 HSPs)
chr2 (244-378)||(4816330-4816464)
chr2 (81-124)||(44187773-44187816)
[»] chr8 (2 HSPs)
chr8 (244-335)||(42293450-42293541)
chr8 (86-123)||(30405194-30405231)
[»] chr4 (2 HSPs)
chr4 (244-282)||(1662454-1662492)
chr4 (76-128)||(2653735-2653787)
[»] chr1 (3 HSPs)
chr1 (246-300)||(32085537-32085591)
chr1 (82-129)||(47203772-47203820)
chr1 (82-127)||(27321299-27321344)
[»] scaffold0111 (1 HSPs)
scaffold0111 (82-115)||(37407-37440)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 244 - 505
Target Start/End: Complemental strand, 24767855 - 24767589
Alignment:
Q  244 actagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaatcttaatatgaaatgaatactgaaacaaaataaaaaggacatt 343  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  24767855 actagactggtgacccgtgcgtcgcacgggtcttattagacgaaatatagttgctaatcttaatatgaaatgaattccgaaacaaaataaaaatgacatt 24767756  T
Q  344 taatattaatgtattgtcagatgatagtaatgtattgttaattaaaatgcaacaccagc--acataatgaagttgtacattctcctaaa---tgtgagtt 438  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||   |||| |||    
T  24767755 taatattaatgtattgtaagatgatagtaatatattgttaattaaaatgcaacaccagcatacataatgaagttgtacattctcctaaatattgtgggtt 24767656  T
Q  439 ttttatgctacacgttacgaaatacttcctcatatacgaagttggatgtcatttcagtgttttcacc 505  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  24767655 ttttatgctacacgttacgaaatacttcctcatagacgacgttggatgtcatttcagtgttttcacc 24767589  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 30826554 - 30826511
Alignment:
Q  86 ttattcaccttaaatgtgaatttttagctactaaactacttgat 129  Q
    |||||||| |||||  ||||||||||||||||||||||||||||    
T  30826554 ttattcactttaaagatgaatttttagctactaaactacttgat 30826511  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 35722590 - 35722547
Alignment:
Q  85 cttattcaccttaaatgtgaatttttagctactaaactacttga 128  Q
    |||||||||| |||| ||||||||||||| ||||||||||||||    
T  35722590 cttattcaccctaaaggtgaatttttagccactaaactacttga 35722547  T

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Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 24076016 - 24076230
Alignment:
Q  13 atcatcaaacctctttaccaaactctgttgatagagacattgcataatatatacagaagtttgaacatcccacttattcaccttaaatgtgaatttttag 112  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||||||  |   ||| ||||||||||||||||| |||||||||||||||||||    
T  24076016 atcatcaaacctctctaccaagctctgttgatagggacattgcataatatataggg---tttaaacatcccacttattcatcttaaatgtgaatttttag 24076112  T
Q  113 ctactaaactacttgatnnnnnnnnnnnnnnnnnntcaaacattttgtgccaaaataatccaatggttaggtaatgtaattttctagttctccttttagt 212  Q
    |||||||||||||||||                  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24076113 ctactaaactacttgataaaaaaaa----------tcaaaccttttgtgccaaaataatccaatggttaggtaatgtaattttctagttctcctttttgt 24076202  T
Q  213 ttacattgctcgatttcttcttttatat 240  Q
    ||||||||||||||||||||||||||||    
T  24076203 ttacattgctcgatttcttcttttatat 24076230  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 5942562 - 5942532
Alignment:
Q  39 gttgatagagacattgcataatatatacaga 69  Q
    |||||||||||||||||||||||||||||||    
T  5942562 gttgatagagacattgcataatatatacaga 5942532  T

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Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 328 - 465
Target Start/End: Original strand, 48126935 - 48127077
Alignment:
Q  328 aaataaaaaggacatttaatattaatgtattgtcagatgatagtaatgtattgttaattaaaatgcaacaccagcacataatgaagt-----tgtacatt 422  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||     ||||||||    
T  48126935 aaataaaaaggacatttaatattaatgtattgtcagataatagaaatgtatcgttaattaaaatgcaacaccagcacataatgaagttgtactgtacatt 48127034  T
Q  423 ctcctaaatgtgagttttttatgctacacgttacgaaatactt 465  Q
    |||||||||||| |||| |||| ||||||||||||||||||||    
T  48127035 ctcctaaatgtgggtttcttatactacacgttacgaaatactt 48127077  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 48126877 - 48126936
Alignment:
Q  241 tggactagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaa 300  Q
    |||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  48126877 tggattagattggtgacccgtacgtcgcacgagtcttattagccgaaatatagttgctaa 48126936  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 55070223 - 55070189
Alignment:
Q  33 aactctgttgatagagacattgcataatatataca 67  Q
    ||||||||||||||| |||||||||||||||||||    
T  55070223 aactctgttgatagatacattgcataatatataca 55070189  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 42665710 - 42665646
Alignment:
Q  252 ggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaatcttaatatgaaatgaa 317  Q
    ||||||||||||||||||  |  ||||||||||||| ||||||||  |||| ||||||||||||||    
T  42665710 ggtgacccgtgcgtcgcaatga-cttattagccgaattatagttggaaatcataatatgaaatgaa 42665646  T

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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 244 - 378
Target Start/End: Complemental strand, 4816464 - 4816330
Alignment:
Q  244 actagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaatcttaatatgaaatgaatactgaaacaaaataaaaaggacatt 343  Q
    |||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||| || ||||||||    ||| |||    
T  4816464 actagattggtgacccgttcgtcgcacaggtcttattagacgaaatatagttgctgatctaaatatgaaatgaataccgatacaaaatagtttggaaatt 4816365  T
Q  344 taatattaatgtattgtcagatgatagtaatgtat 378  Q
    |||||| ||||||||||||  ||||||||||||||    
T  4816364 taatatcaatgtattgtcaattgatagtaatgtat 4816330  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 44187773 - 44187816
Alignment:
Q  81 cccacttattcaccttaaatgtgaatttttagctactaaactac 124  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||    
T  44187773 cccacttattcactttaaaagtgaatttttagccactaaactac 44187816  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 42293541 - 42293450
Alignment:
Q  244 actagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaatcttaatatgaaatgaatactgaaacaaaataaaa 335  Q
    |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||    
T  42293541 actagattggtgacccgtgcgccgcacgggtcttatgagccgaaatatagttgctaatctcaatatgaaaagaataccgaaacacaataaaa 42293450  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 30405194 - 30405231
Alignment:
Q  86 ttattcaccttaaatgtgaatttttagctactaaacta 123  Q
    |||||||||||||||||||||||||||| | |||||||    
T  30405194 ttattcaccttaaatgtgaatttttagccattaaacta 30405231  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 1662454 - 1662492
Alignment:
Q  244 actagactggtgacccgtgcgtcgcacgggtcttattag 282  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1662454 actagactggtgacccgtgcgtcgcacgggtcttattag 1662492  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 2653787 - 2653735
Alignment:
Q  76 aacatcccacttattcaccttaaatgtgaatttttagctactaaactacttga 128  Q
    ||||||||||||||||||||||||  ||||||| || |||||| |||||||||    
T  2653787 aacatcccacttattcaccttaaagatgaatttctaactactacactacttga 2653735  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 32085591 - 32085537
Alignment:
Q  246 tagactggtgacccgtgcgtcgcacgggtcttattagccgaaatatagttgctaa 300  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  32085591 tagattggtgacccgtgcgttgcacgcgtcttattagccgaaatattgttgctaa 32085537  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 47203820 - 47203772
Alignment:
Q  82 ccacttattcacctt-aaatgtgaatttttagctactaaactacttgat 129  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  47203820 ccacttattcacctttaaatgtgaatttttaaccactaaactacttgat 47203772  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 27321299 - 27321344
Alignment:
Q  82 ccacttattcaccttaaatgtgaatttttagctactaaactacttg 127  Q
    |||||||||||  ||||| ||||||||||||| |||||||||||||    
T  27321299 ccacttattcattttaaaggtgaatttttagccactaaactacttg 27321344  T

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Target: scaffold0111 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 37407 - 37440
Alignment:
Q  82 ccacttattcaccttaaatgtgaatttttagcta 115  Q
    ||||||||||||||||||||||||||||||||||    
T  37407 ccacttattcaccttaaatgtgaatttttagcta 37440  T

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