View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13687_low_4 (Length: 454)

Name: NF13687_low_4
Description: NF13687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13687_low_4
NF13687_low_4
[»] chr2 (4 HSPs)
chr2 (1-444)||(40059743-40060195)
chr2 (21-308)||(40077841-40078129)
chr2 (3-444)||(40085628-40086083)
chr2 (362-425)||(40078205-40078268)
[»] chr7 (1 HSPs)
chr7 (40-147)||(35052652-35052758)
[»] chr5 (2 HSPs)
chr5 (21-138)||(12735460-12735579)
chr5 (21-138)||(12798287-12798406)
[»] chr4 (2 HSPs)
chr4 (233-308)||(22015579-22015654)
chr4 (64-141)||(22015667-22015744)
[»] chr3 (1 HSPs)
chr3 (21-147)||(53322735-53322862)


Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 40059743 - 40060195
Alignment:
Q  1 ggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40059743 ggttggtaatttatgtgtgatatttttctggggtgttcatctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattccgg 40059842  T
Q  101 ggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059843 ggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaaga 40059942  T
Q  201 aattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059943 aattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataatttt 40060042  T
Q  301 atctcaggnnnnnnnatcactaaatacaagtattgcgagtatatttttgtaga-----------taaagtttatatttgttaatgtgagagtatttgtgc 389  Q
    ||||||||       |||||||||||||| ||| |||||||||||||||||||            |||||| ||||||||||||||||||||||||||||    
T  40060043 atctcaggtttttttatcactaaatacaattatagcgagtatatttttgtagacatattaaggtcaaagttaatatttgttaatgtgagagtatttgtgc 40060142  T
Q  390 tttctattgccagattgaaaatgagtatggagacatcgattcagcctatgcttct 444  Q
      |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40060143 --tctattgccagattgaaaatgagtatggagacatcgattcagcctatggttct 40060195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 40077841 - 40078129
Alignment:
Q  21 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 118  Q
    |||||||||| |||||||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40077841 tatttttctgtggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccagggattaagttccgaactg 40077940  T
Q  119 ataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaagaaattttgtcttcaggccg 218  Q
    | ||||||||||||||||||| | ||||| | || |||||||||| | | |||||||||||||||||||||||||| || |||| |||||||||||||||    
T  40077941 acaatgaaccatttaaggtag-gctaaccttcaccctgttgcttcatgcatttgtccttaaatctgagttcacttgacaggaaactttgtcttcaggccg 40078039  T
Q  219 aaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg 308  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40078040 aaatgaagcgattcaccgctaagattgtcgatctcatgaagcaagagaaactgtatgcatcacaaggaggacctataattttatctcagg 40078129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 3 - 444
Target Start/End: Original strand, 40085628 - 40086083
Alignment:
Q  3 ttggtaatttatgtgtgatatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccg 100  Q
    ||||||||||||||||  ||| ||||  ||||||||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  40085628 ttggtaatttatgtgtattatatttcgagggtgttcatgtctaattgagggctttaacttcttgacagtggtttccctctttggcttcacttcattccag 40085727  T
Q  101 ggattaagttccgaactgataatgaaccatttaaggtagaggtaaccataactctgttgcttcctacttttgtccttaaatctgagttcacttgccaaga 200  Q
    ||||||||||||||||||| |||||||||||||||||| || ||||| | | ||   |||||| | |||||||||||  | ||||||||||||| || ||    
T  40085728 ggattaagttccgaactgacaatgaaccatttaaggta-agttaaccttcagtccagtgcttcatgcttttgtccttgga-ctgagttcacttgacagga 40085825  T
Q  201 aattttgtcttcaggccgaaatgaagagattcaccgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataatttt 300  Q
    || ||||||||||||  ||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40085826 aactttgtcttcaggttgaaatgaagcgattcaccactaagattgtcgacctcatgaagcaagagaaactgtatgcatcacaaggaggacctataatttt 40085925  T
Q  301 atctcaggnnnnnnnatcacta-----aatacaagtattgcgagtatatttttgtagat---------aaagtttatatttgttaatgtgagagtatttg 386  Q
    ||||||||       ||||  |     ||||||||||| |  | |||||| ||| ||||         ||||||||||||||||||||||||||| ||||    
T  40085926 atctcaggtttttttatcatgaaatacaatacaagtatagttaatatattcttgaagatattaaggtcaaagtttatatttgttaatgtgagagtgtttg 40086025  T
Q  387 tgctttctattgccagattgaaaatgagtatggagacatcgattcagcctatgcttct 444  Q
    || |||||| || ||||| |||||||||||||||||||||||||||||||||| ||||    
T  40086026 tgatttctaatgacagatagaaaatgagtatggagacatcgattcagcctatggttct 40086083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 362 - 425
Target Start/End: Original strand, 40078205 - 40078268
Alignment:
Q  362 atatttgttaatgtgagagtatttgtgctttctattgccagattgaaaatgagtatggagacat 425  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  40078205 atatttgttaatgtgagagtatttgtgctttctaatgccagattgaaaatgagtatggaaacat 40078268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 35052758 - 35052652
Alignment:
Q  40 tctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtag 139  Q
    |||||| |||||||||||||||||||||||||||  ||||||||| ||||||||||||| ||||||| ||||| ||| || ||||||||||||||||||     
T  35052758 tctaattgagggctttaacttcttaacagtggttaacctctttggattcacttcattccagggattaggttccaaacagacaatgaaccatttaaggta- 35052660  T
Q  140 aggtaacc 147  Q
    ||||||||    
T  35052659 aggtaacc 35052652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 12735579 - 12735460
Alignment:
Q  21 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 118  Q
    |||||| ||||||| |||||  ||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  |    
T  12735579 tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag 12735480  T
Q  119 ataatgaaccatttaaggta 138  Q
    | ||||||||||||||||||    
T  12735479 acaatgaaccatttaaggta 12735460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 12798406 - 12798287
Alignment:
Q  21 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 118  Q
    |||||| ||||||| |||||  ||||| ||||||||||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||| ||  |    
T  12798406 tattttcctggggtcttcatttctaattgagggctttaacttcttaagagtggttaacctctttggattcacttcattccagggattaagttccaaatag 12798307  T
Q  119 ataatgaaccatttaaggta 138  Q
    | ||||||||||||||||||    
T  12798306 acaatgaaccatttaaggta 12798287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 22015654 - 22015579
Alignment:
Q  233 accgctaagattgtcgatctcatgaagcaagagaaactttatgcatcacaaggaggacctataattttatctcagg 308  Q
    |||||||||||||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  22015654 accgctaagattgtcgatatgatgaagcaagagaacctctatgcatcacaaggaggacctataattttatctcagg 22015579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 22015744 - 22015667
Alignment:
Q  64 aacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactgataatgaaccatttaaggtagag 141  Q
    |||||||||||||| |||||| | || || ||| | || ||||||||||||||| ||||||||||||| |||| ||||    
T  22015744 aacagtggtttccccctttggttgcattttattgctggaattaagttccgaactaataatgaaccattcaaggcagag 22015667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 53322735 - 53322862
Alignment:
Q  21 tatttttctggggtgttcat--ctaatcgagggctttaacttcttaacagtggtttccctctttggcttcacttcattcccgggattaagttccgaactg 118  Q
    |||||||||||||| |||||  ||||| ||||||||||||||||||| | |||||  ||||||||  ||||||||||||| ||||||||||||| ||  |    
T  53322735 tatttttctggggtcttcatttctaattgagggctttaacttcttaagattggttaacctctttgtattcacttcattccagggattaagttccaaatcg 53322834  T
Q  119 ataatgaaccatttaaggtagaggtaacc 147  Q
    | |||||||||||||||||| ||||||||    
T  53322835 acaatgaaccatttaaggta-aggtaacc 53322862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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