View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13687_low_5 (Length: 301)
Name: NF13687_low_5
Description: NF13687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13687_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 52600663 - 52600407
Alignment:
| Q |
2 |
agtaacataggtgcatcctgattaagactttaagaattcaggttatcattgtcaggtcaaaattgtgtatcaaagtaagtatcattagatttagtaccta |
101 |
Q |
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| T |
52600663 |
agtaacattggtgcatcatgattaagactttaagaattcaggttctcattgtcaggtcaaaattgtgtatcaaagtaagtatcattagatttagtaccta |
52600564 |
T |
|
| Q |
102 |
tattatacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtggcttttctcaatgtctggaaatcaaagtagc |
201 |
Q |
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| T |
52600563 |
tattatacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtggcttttctcaatgtctggaaatcaaagtagc |
52600464 |
T |
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| Q |
202 |
taattgtcctaagattcccactaatgaactccatgaatcctgttatacatatagaaa |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52600463 |
taattgtcctaagattcccactaatgaactccatgaatcctgttatacatatagaaa |
52600407 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 16912588 - 16912717
Alignment:
| Q |
106 |
atacctgatagacagggccaaatccaccacttccaagaagatatctgcggtggaaattcttggtggcttttctcaatgtctggaaatcaaagtagctaat |
205 |
Q |
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|||||| ||| ||||| ||||||||||||||||||||||||| || | ||| || ||||| || || ||||| |||||| |||||||||||||||| |
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| T |
16912588 |
ataccttatatacaggtccaaatccaccacttccaagaagatttccatgaaagaagttattggttgccttcctcaacgtctggtaatcaaagtagctaat |
16912687 |
T |
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| Q |
206 |
tgtcctaagattcccactaatgaactccat |
235 |
Q |
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| T |
16912688 |
agaccgaaggctcccactaaagaactccat |
16912717 |
T |
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