View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13688_high_4 (Length: 369)
Name: NF13688_high_4
Description: NF13688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13688_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 28826358 - 28826112
Alignment:
| Q |
23 |
atcatcaacttatgtctttcctttatgtct----acctcaaactgagacgacatttcaaagaaaataaaa----------tttattaattctatttaatt |
108 |
Q |
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| T |
28826358 |
atcatcaacttatgtctttcctttatgtctgtctacctcaaactgagacgacatttcaaagaaaataaaaataaaataaatttattaattctatttaa-- |
28826261 |
T |
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| Q |
109 |
aaaaatgaaatatgagttaaagtagggtagggtacggttgtcctctgaaactaataattgtgtatgtacaaaaaagatagtggtgcagtagagagatttt |
208 |
Q |
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| T |
28826260 |
--aaatgaaatatgagttaaagtagggtagggtacggttgtcctctgaaactaataattgtgtatgtacaaaaaagatagtggtgcagtggagagatttt |
28826163 |
T |
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| Q |
209 |
acggcatgcggttaaaaatgggaaacactgcttcactgcaattatcattac |
259 |
Q |
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| T |
28826162 |
acggcatgcggttaaaaatgggaaacactgcttcactgcaattatcattac |
28826112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 28826042 - 28826002
Alignment:
| Q |
329 |
attccatcaactctgaacaatgaaataatgatggctttttt |
369 |
Q |
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| T |
28826042 |
attccatcaactctgaacaatgaaataatgatggctttttt |
28826002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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