View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13688_high_9 (Length: 314)
Name: NF13688_high_9
Description: NF13688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13688_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 39296532 - 39296229
Alignment:
| Q |
1 |
gaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcgtaacttacagttaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||| |
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| T |
39296532 |
gaattgtgatagctaaagtgaaccaacactcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaactaggctcacaacttactgttaa |
39296433 |
T |
|
| Q |
101 |
aagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
39296432 |
aagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacgttgtggtgaagatgacgaataaaaggaaaagct |
39296333 |
T |
|
| Q |
201 |
gagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttttgatcgtgagaacaagag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
39296332 |
gagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaagtgttttcatcgttgtttgtgatcgtgagaacgagag |
39296233 |
T |
|
| Q |
301 |
aata |
304 |
Q |
| |
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|||| |
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| T |
39296232 |
aata |
39296229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 39289652 - 39289345
Alignment:
| Q |
1 |
gaattgtgatagctaaagtgaaccaacattcttgtttcttaatcatctttgaaatggttatgtgataggtttttgaacgaggctcgtaacttacagttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||| || ||||||| ||| | |
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| T |
39289652 |
gaattgtgatagctaaagtgaaccaacattcttgtttcttaaccatctttaaaatggttaagtgataggtttttgaactaggttcataacttatagtaag |
39289553 |
T |
|
| Q |
101 |
aagaatgaaaaaccatagaaggataagagctaaccaaccggcaaaacggtggattcgctcaaaaacattgtggtgaagatgacgaataagaggaaaagct |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||| |
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| T |
39289552 |
aagaatgaataaccatagaaggataagagctaaccaaccggaaaaacggtggattcgctcgaaaacattgtggtggagatgtcgaataactggaaaagct |
39289453 |
T |
|
| Q |
201 |
gagagcgaagtgagtgtaaggagcgagagaatggcgaatgcaacgccgagaatctctggagaag---tgttttcatcgttgtttttgatcgtgagaacaa |
297 |
Q |
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| ||||||| |||||||| ||| ||||| |||||||||||||| ||||| ||||| ||||||| || ||| |||||| ||||||||||||| || | |
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| T |
39289452 |
gcaagcgaagagagtgtaatgagtgagaggatggcgaatgcaacaccgagtatctccggagaagaattggttttgtcgttgcttttgatcgtgagtacga |
39289353 |
T |
|
| Q |
298 |
gagaataa |
305 |
Q |
| |
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|||||||| |
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| T |
39289352 |
gagaataa |
39289345 |
T |
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