View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13688_low_1 (Length: 541)
Name: NF13688_low_1
Description: NF13688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13688_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 207 - 535
Target Start/End: Original strand, 38997580 - 38997890
Alignment:
| Q |
207 |
attgtaaaagtagactttatataaccaatgaaatgaacaactaactaactttgtaactaacatttatatcgaatattgttccctttgcccggtgtttaac |
306 |
Q |
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| T |
38997580 |
attgtaaaagtagactttatataactaattaaatgaacaactaactaactttgtaactaacatttatatcgaatattgttccctttttccggtgtttaac |
38997679 |
T |
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| Q |
307 |
ttgaccgttatgttaatgttaggcacactatgtggggagattggagaatggaaaagttttcgacagtagctacaatcgtggcaagccacttacatttcgc |
406 |
Q |
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| T |
38997680 |
ttgaccgttatgttaatgttaggcacactatgtggggagattggagaatggaaaagttttcgacagcagctacaatcgtggcaagccacttacatttcgc |
38997779 |
T |
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| Q |
407 |
gttggtgttggagaggtatcatgattatatccatagttttaaattgctgttacggttataatatagaccagcgagaaattgtggccttgcacacagctca |
506 |
Q |
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| T |
38997780 |
gttggtgttggagaggtatcatgattatatccatagttttaaattgctgtt------------------agcgagaaaatgtggccttgcacacagctca |
38997861 |
T |
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| Q |
507 |
aaatcctttatattgcagatgcattaggc |
535 |
Q |
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| T |
38997862 |
aaatcctttatattgcagatgcattaggc |
38997890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 38997316 - 38997502
Alignment:
| Q |
1 |
cttgagttttggtcttctaccttctttattgcaaccaataatacccactgcaacagcagctgaagcagttccatgtcaattaactgtggctccttcaggc |
100 |
Q |
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| T |
38997316 |
cttgagttttggtcttctacattctttattgcaaccaataatacccactgcaacagctgctgaagcagttccatgtcaattaactgtggctccttcaggc |
38997415 |
T |
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| Q |
101 |
ctttcctattgtgataaagttgttggctatggtcctcaggctgttaagggacagctcattacggtaaccatgtcacagtttaatact |
187 |
Q |
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| T |
38997416 |
ctttcctattgtgataaagttgttggctatggtcctcaggctgttaagggacagctcattaaggtaaccatgtcacagtttaatact |
38997502 |
T |
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