View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13688_low_2 (Length: 245)
Name: NF13688_low_2
Description: NF13688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13688_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 6638074 - 6637892
Alignment:
| Q |
13 |
atacgaggcaacaaatgcaacggcaagaaaaaagagatgatcaatactaataaaaaacttgatgtccttatgaaacatttgggattcgttggatcttctt |
112 |
Q |
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| T |
6638074 |
atacgaggcaacaaatgcaacggcaagaaaaaagagatgatcaatactaataaaaaacttgatgtccttatgaaacatttgggattcgttggatcttctt |
6637975 |
T |
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| Q |
113 |
cccatgtttcaaaccccaacagtgaatcaaatgagcacattgatgaagttgtcgatgaagatgacaatgattttgttgaagat |
195 |
Q |
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| T |
6637974 |
cccatgtttcaaaccccaacagtgaattaaatgagcacattgatgaagttgtcgatgaagatgacaatgattttgttgaagat |
6637892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 29757788 - 29758017
Alignment:
| Q |
7 |
agttgcatacgaggcaacaaatgcaacggcaagaaaaaagagatgatcaatactaataaaaaacttgatgtccttatgaaacatttgggattcgttggat |
106 |
Q |
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| T |
29757788 |
agttgcaaatgaggcaccaaatgcaacggcaagaaaa-agagatgagcaaaactaataaaaaacttgctgtcattatgaaacatttgggatttgttggat |
29757886 |
T |
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| Q |
107 |
cttcttcccatgtttcaaaccccaacagtgaatcaaatgagcacattgatgaagttgtcga------------tgaagatgacaatgattttgttgaaga |
194 |
Q |
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| T |
29757887 |
cttcttcccatgtttcaaatcccaacagtgaatcaaatgagcacattgatgaagaggacaacaatgatttttttgaagatgaccatgatttttctgaaga |
29757986 |
T |
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| Q |
195 |
tgttgatgaagataacattagttatcatatt |
225 |
Q |
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| T |
29757987 |
tgttgatgaagataacaatagttatcatatt |
29758017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 127828 - 127713
Alignment:
| Q |
45 |
agagatgatcaatactaataaaaaacttgatgtccttatgaaacatttgggattcgttggatcttcttcccatgtttcaaaccccaacagtgaatcaaat |
144 |
Q |
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| T |
127828 |
agagatgatcaatgctaataaaaaacttgctatcattatgaaacatttgggatttgttggatcttcttcctatgtttcaaaccccaacagtgaatcaaat |
127729 |
T |
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| Q |
145 |
gagcacattgatgaag |
160 |
Q |
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| T |
127728 |
gagcacattgatgaag |
127713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 127693 - 127624
Alignment:
| Q |
156 |
tgaagttgtcgatgaagatgacaatgattttgttgaagatgttgatgaagataacattagttatcatatt |
225 |
Q |
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| T |
127693 |
tgaagatgtcgatgaagatgacaatgattttgttgaagatgttgatgaagataacataagttatcatatt |
127624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 127875 - 127840
Alignment:
| Q |
89 |
atttgggattcgttggatcttcttcccatgtttcaa |
124 |
Q |
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| T |
127875 |
atttgggatttgttggatcttcttcccatgtttcaa |
127840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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