View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13689_high_2 (Length: 396)
Name: NF13689_high_2
Description: NF13689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13689_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 151 - 337
Target Start/End: Original strand, 27162042 - 27162228
Alignment:
| Q |
151 |
ttttgtattttattactcatttgagaggtggcttgttagtgcggcattcttttatgcagctcatttgactcacttgtgtttgggtcttgtggactgaatg |
250 |
Q |
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| T |
27162042 |
ttttgtattttattactcattcgagaggtggcttgttagtgcgacattcttttatgcagctcatttggctcacttgtgtttgggtcttgtggactgaacg |
27162141 |
T |
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| Q |
251 |
taacaatggttttttcaatcacaaagagaatttgattgatcagctgttgcatgatgtattggttgattaaggctgctaatggtaact |
337 |
Q |
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| T |
27162142 |
taacaatggttttttcaatcacaaggagaatttgattgaacagcagttgcatgatgtattggtggattaaggctgctaatggtaact |
27162228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 27161924 - 27161993
Alignment:
| Q |
32 |
caagagacacaaaagaagtaggaaagaaatatagtgcatgcttggtatggaagatatgcaaatttgtggc |
101 |
Q |
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| T |
27161924 |
caagagacacaaaagaagtaggaaagaaatatagtgcatgcttggtatggatgatatgcaaatttgtggc |
27161993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 18601858 - 18601741
Alignment:
| Q |
176 |
aggtggcttgttagtgcggcattcttttatgcagctcatttgactcacttgtgtttgggtcttgtggactgaatgtaacaatggttttttcaatcacaaa |
275 |
Q |
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| T |
18601858 |
aggttgcttgttagggcgacgttcttttatgcagctcatcttgctcacttgtgtttgggtcttgtgaactgaaagtaacaatcgtcttttcattcacaag |
18601759 |
T |
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| Q |
276 |
gagaatttgattgatcag |
293 |
Q |
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| T |
18601758 |
gagaattcgattgatcag |
18601741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 18601710 - 18601649
Alignment:
| Q |
307 |
tattggttgattaaggctgctaatggtaactttgtgctaggtgttcaatgttggttgtcgtg |
368 |
Q |
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| T |
18601710 |
tattggtggattaaggctgctaatactaactttgtactaggtgttcatcgttggttgtcgtg |
18601649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 368
Target Start/End: Original strand, 27945870 - 27945974
Alignment:
| Q |
267 |
aatcacaaagagaatttgattgatcagctgttgcatgatgtat--tggttgattaaggctgctaatggtaactttg-tgctaggtgttcaatgttggttg |
363 |
Q |
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| T |
27945870 |
aatcacaaggaaaattcgattgatcagttgctgcataatgtaaaatggtggattaaggctgccaatgctaacttttatgctaggtgttcagcgttggttg |
27945969 |
T |
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| Q |
364 |
tcgtg |
368 |
Q |
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| T |
27945970 |
tcgtg |
27945974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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