View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13689_low_1 (Length: 588)
Name: NF13689_low_1
Description: NF13689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13689_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Complemental strand, 14631000 - 14630533
Alignment:
| Q |
13 |
atgcaacgtgataagcaagaagccaacattccaacctagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14631000 |
atgcaacgtgataagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactac |
14630901 |
T |
|
| Q |
113 |
nnnnnnntatgatttgaattgcacattctcttttaatttatcaaaaacctatgtatcatgttgtttataatatccagttgtgtaatagattgtgttaagc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14630900 |
acaaaaatatgatttgaattgcacattctcttttaatttatcagaaacctatgtatcatgt-gtttataatatccagttgtgtaacagattgtgttaagc |
14630802 |
T |
|
| Q |
213 |
ataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactccgtcaatatcgttgtcattgaattgttcttttcaaatctgttttct |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14630801 |
ataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactccattaatatcgttgtcattgaattgttcttttcaagtctgttttct |
14630702 |
T |
|
| Q |
313 |
cttaactccttttggaagttaactttatcttatgatgataaattgacatcctccttttattgcaaagaatataagaatgtcattgttgagcattttgtta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14630701 |
cttaactccttttggaagttaactttatcttatgataataaattgacatcctccttttattgcaaagaatataagaatgccattgttgagcattttgtta |
14630602 |
T |
|
| Q |
413 |
attgacttgatatgttatttaaactttagaactatgggcatttaacttctaatatttgacttcctttta |
481 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14630601 |
attgacttgatatgttatttagactttagaactatgggcgtttaacttctaatatttgacttcctttta |
14630533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 16641595 - 16641374
Alignment:
| Q |
13 |
atgcaacgtgataagcaagaagccaacattccaacctagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactac |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
16641595 |
atgcaacgtgataagcaggaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaaagactgtgaagaaaatgtaagaaacatgcctac |
16641496 |
T |
|
| Q |
113 |
nnnnnnntatgatttgaattgcacattctcttttaatttatcaaaaacctatgtatcatgttgtttataatatccagttgtgtaatagattgtgttaagc |
212 |
Q |
| |
|
|| ||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16641495 |
agaaaaatacgatttaaattgcatattctcttttaacttatcaaagacctatgtatcatgttgtttataatatccagttgtgtaacagattgtgttaagc |
16641396 |
T |
|
| Q |
213 |
ataagttcaaatgttaaaatct |
234 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
16641395 |
ataagttcaaatgttaaaatct |
16641374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 453 - 573
Target Start/End: Complemental strand, 16632411 - 16632291
Alignment:
| Q |
453 |
tttaacttctaatatttgacttccttttacttataaaaactttgaattctttatgtttgtaacattttctgaagctcttcaatattctgacatgatctac |
552 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16632411 |
tttaacttctaatatttgactttcttttacttataaaaactttgaattctttatgtttacaacattttctgaagctcttcaatattctgacatgatctac |
16632312 |
T |
|
| Q |
553 |
catatgtgtaaatgtaatata |
573 |
Q |
| |
|
||| ||| ||||||||||||| |
|
|
| T |
16632311 |
catctgtttaaatgtaatata |
16632291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 300 - 409
Target Start/End: Complemental strand, 16641379 - 16641270
Alignment:
| Q |
300 |
aaatctgttttctcttaactccttttggaagttaactttatcttatgatgataaattgacatcctccttttattgcaaagaatataagaatgtcattgtt |
399 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16641379 |
aaatctgttttctctcaactctttttggaagttaactttatcttatgataataaactgacattctccttatattgcaaagaatataagaatgtcattgtt |
16641280 |
T |
|
| Q |
400 |
gagcattttg |
409 |
Q |
| |
|
|| ||||||| |
|
|
| T |
16641279 |
gatcattttg |
16641270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 16632510 - 16632421
Alignment:
| Q |
13 |
atgcaacgtgataagcaagaagccaacattccaacctagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
16632510 |
atgcaacgtgataagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaacagggttatgaagaaaatgtaagaa |
16632421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 512 - 574
Target Start/End: Complemental strand, 14630532 - 14630470
Alignment:
| Q |
512 |
taacattttctgaagctcttcaatattctgacatgatctaccatatgtgtaaatgtaatatat |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14630532 |
taacattttctgaagctcttcaatattctgacatgatctaccatctgtgtaaatgtaatatat |
14630470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 15621136 - 15621187
Alignment:
| Q |
203 |
tgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagca |
254 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
15621136 |
tgtgttaagcataagttcaaacgttaaaatctttttgttttctactcgagca |
15621187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 15644905 - 15644956
Alignment:
| Q |
203 |
tgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagca |
254 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
15644905 |
tgtgttaagcataaattcaaacattaaaatctttttgttttctactcgagca |
15644956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 526 - 573
Target Start/End: Complemental strand, 16641242 - 16641195
Alignment:
| Q |
526 |
gctcttcaatattctgacatgatctaccatatgtgtaaatgtaatata |
573 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
16641242 |
gctcttcactattctgacttgatctaccatctgtttaaatgtaatata |
16641195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 16620001 - 16619938
Alignment:
| Q |
486 |
taaaaactttgaattctttatgtttgtaacattttctgaagctcttcaatattctgacatgatct |
550 |
Q |
| |
|
|||||||||| |||||||||||||| || | |||| ||| ||||||||||||||||||| |||| |
|
|
| T |
16620001 |
taaaaacttttaattctttatgtttatagc-ttttaggaacctcttcaatattctgacattatct |
16619938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 486 - 573
Target Start/End: Complemental strand, 38880845 - 38880759
Alignment:
| Q |
486 |
taaaaactttgaattctttatgtttgtaacattttctgaagctcttcaatattctgacatgatctaccatatgtgtaaatgtaatata |
573 |
Q |
| |
|
||||||||| |||||||||||||| |||| |||| ||||||| |||||||||||||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
38880845 |
taaaaacttctaattctttatgtttataac-ttttatgaagctgttcaatattctgacatgatctatcatttgtttaaatgtaatata |
38880759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 38881224 - 38881149
Alignment:
| Q |
191 |
tgtgtaatagattgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactc |
266 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||| ||| |||| |
|
|
| T |
38881224 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactc |
38881149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 38881353 - 38881224
Alignment:
| Q |
24 |
taagcaagaagccaacattccaacctagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactacnnnnnnntatg |
123 |
Q |
| |
|
|||||||| |||||||| | ||| |||||||||||| |||||| ||||||||| |||||| ||| ||||||||||||| |||| |||| |
|
|
| T |
38881353 |
taagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaacgtgtaagaaacatgcctacacaaaaatatg |
38881254 |
T |
|
| Q |
124 |
atttgaattgcacattctcttttaatttat |
153 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| |
|
|
| T |
38881253 |
atttgaattgtgcattttcttttagtttat |
38881224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University