View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13689_low_4 (Length: 256)
Name: NF13689_low_4
Description: NF13689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13689_low_4 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 5689881 - 5690115
Alignment:
| Q |
22 |
agaaggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgc |
121 |
Q |
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| T |
5689881 |
agaaggctcaacatgtttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgc |
5689980 |
T |
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| Q |
122 |
aacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgcta |
221 |
Q |
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| T |
5689981 |
aacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgcta |
5690080 |
T |
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| Q |
222 |
agtgaccataatctccaaaatggaaactgtagatt |
256 |
Q |
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| T |
5690081 |
agtgaccataatcaccaaaatggaaactgtagatt |
5690115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 25914568 - 25914796
Alignment:
| Q |
25 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
124 |
Q |
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| T |
25914568 |
aggctcaactggtttaccaagaagctcttgtggcaaatccttaatacccttcaaataaaatgtgtagaaaatcttaaatggaaaaacaatttgattgagc |
25914667 |
T |
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| Q |
125 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctcaggataggttaaatatggtccttgaactgctaagt |
224 |
Q |
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| T |
25914668 |
ttcacttggcctgtaacaccttcaaaaattccagtaccaccagtcacagttagatatgtgtcctc---ataggttaggtaaggtccttgcacagctattt |
25914764 |
T |
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| Q |
225 |
gaccataatctccaaaatggaaactgtagatt |
256 |
Q |
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| T |
25914765 |
gaccatagtctccaacgtgaaaactgtagatt |
25914796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 6792803 - 6792639
Alignment:
| Q |
25 |
aggctcaacatgcttaccaagaagctcttgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaac |
124 |
Q |
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|||||||| | | ||| |||||| ||| |||||||||||||||||||| | | ||||||||| || || ||||| |||||||| ||||||||||| | | |
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| T |
6792803 |
aggctcaataggattaacaagaaactcatgtggcaaatccttaatacccttaagataaaatgtgtaaaatatcttaaatggaaacacaatttgatgaagc |
6792704 |
T |
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| Q |
125 |
ttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctc |
189 |
Q |
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| T |
6792703 |
ttaacttgaccataaacaccttcaaatattccagttccaccagtcacagccaaataagtatcctc |
6792639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 6800246 - 6800131
Alignment:
| Q |
53 |
tgtggcaaatccttaatacctctcaaataaaatgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaata |
152 |
Q |
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| T |
6800246 |
tgtggcaaatccttaatacccataagataaaatgtgtaaaatagcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaata |
6800147 |
T |
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| Q |
153 |
ttccagaaccaccagt |
168 |
Q |
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|||||| |||||||| |
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| T |
6800146 |
ttccagttccaccagt |
6800131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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