View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13689_low_7 (Length: 224)
Name: NF13689_low_7
Description: NF13689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13689_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 45548781 - 45548602
Alignment:
| Q |
27 |
gaaactagagaaaatttcgataccatcacaaacaccattgagaaacaatcaggttatgaagaaccagtggagacgcaaccaaaacaaaaaggttacacag |
126 |
Q |
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| T |
45548781 |
gaaattagagaaaattttgataccatcacaaacaccgttgagaaacaatcaggttatgaagaaccagtggagacgcaaccaaaacaaaaaggttacacag |
45548682 |
T |
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| Q |
127 |
atgaaattgaaatctcgtctgcggaagaagctgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaat |
206 |
Q |
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| T |
45548681 |
atgaaattgaaatctcgtctgcggaagaagctgataaaactctccctcctgaaaatgacgaagcttctaagctcggaaat |
45548602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 21846685 - 21846614
Alignment:
| Q |
27 |
gaaactagagaaaatttcgataccatcacaaacaccattgagaaacaatcaggttatgaagaaccagtggag |
98 |
Q |
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| T |
21846685 |
gaaactagagaaaacttcaataccattacaaacaccgttgaaaaacaatcaggttatgaagaaccagtggag |
21846614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 19671274 - 19671315
Alignment:
| Q |
46 |
ataccatcacaaacaccattgagaaacaatcaggttatgaag |
87 |
Q |
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| T |
19671274 |
ataccatcccaaccaccattgagaaacaaccaggttatgaag |
19671315 |
T |
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