View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_high_1 (Length: 689)
Name: NF1368_high_1
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 30 - 677
Target Start/End: Complemental strand, 42744067 - 42743404
Alignment:
| Q |
30 |
aagggaacatagagtggtttacacagaacactggctttatgtttgagcaagcaccttatttcaatgcccttttggtttttattgaggtaaactttattgt |
129 |
Q |
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| T |
42744067 |
aagggaacatagagtggtttacacaaaacactggctttatgtttgagcaagcaccttatttcaatgcccttttggtttttattgaggtaaactttattgt |
42743968 |
T |
|
| Q |
130 |
cttggattctctacctcttctgcattgtctttttgtctcatatcctagaaaacattttagtacatgtctggattaacggtgaaattgacaacaaaatcgc |
229 |
Q |
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| T |
42743967 |
cttggattctctacctcttctgcattgtctttttgtctcatatcctagacaacattttagtacatgtctggattaacgttgaaattgacaacaaaatcgc |
42743868 |
T |
|
| Q |
230 |
agttgatttcgttaaactcaccatcaactcaaatatgtatttaatgatttgaaattaaatttgaattatatatgtttatcttatgcattagaaattgaaa |
329 |
Q |
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| T |
42743867 |
agttgatttcgttaaactcaccatcaactcaaatatgtatttaatgatttgaaattaaatttgaattatatatgtttatcttatgcattagaaattgaaa |
42743768 |
T |
|
| Q |
330 |
tgcagcatagattctatggaaaatcaattccatttggaggcaagaagaaggttgcatatgcaaatagcagtacacttggatatcttagttctgcacaagc |
429 |
Q |
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| T |
42743767 |
tgcagcatagattctatggaaaatcaattccatttggaggcaagaagaaggttgcatatgcaaatagcagtacacttggatatcttagttctgcacaagc |
42743668 |
T |
|
| Q |
430 |
tttggctgattatgccactcttatcattgacctcaagaaaaatttgtcagcaactgagtcccctgttgttgtgtttggaggatcctatggaggaagtata |
529 |
Q |
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| T |
42743667 |
tttggctgattatgccactcttatcattgacctcaagaaaaatttgtcagcaactgagtcccctgttgttgtgtttggaggatcctatggaggaagtata |
42743568 |
T |
|
| Q |
530 |
at----------------ctatttcatttttgttgtttaattgaagtgtttagtttttaacttgcaatcaagattttttaaattatggtaatagtagcaa |
613 |
Q |
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| T |
42743567 |
atctatattatcaaaattctatttcatttttgttgtttaattgaagtgtttagtttttaacttgcaatcaagattttttaaattatggtaatagtagcaa |
42743468 |
T |
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| Q |
614 |
tgcgatccttagtatttttaagaaaataacaacttatttatcttagagtttagttaaatatatt |
677 |
Q |
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| T |
42743467 |
tgcgatccttagtatttttgagaaaataacaacttatttatcttagagtttagttaaatatatt |
42743404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 330 - 529
Target Start/End: Complemental strand, 42748244 - 42748045
Alignment:
| Q |
330 |
tgcagcatagattctatggaaaatcaattccatttggaggcaa-gaagaaggttgcatatgcaaatagcagtacacttggatatcttagttctgcacaag |
428 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||| || || |||| ||||| || || |||||| |||||||||||| | ||||| |||| | |
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| T |
42748244 |
tgcagcatagatactatggaaaatcaataccatttggaggaaatgatgaag-ttgcaaataaaactagcagcacacttggatatatgagttccacacagg |
42748146 |
T |
|
| Q |
429 |
ctttggctgattatgccactcttatcattgacctcaagaaaaatttgtcagcaactgagtcccctgttgttgtgtttggaggatcctatggaggaagtat |
528 |
Q |
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|||| |||||||||||||| || || ||||| || ||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |
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| T |
42748145 |
ctttagctgattatgccacactcataattgatctgaagaagaatttatcagcaactgattcccctgttgtcgtgtttggaggatcctatggtggaagtat |
42748046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 42748791 - 42748704
Alignment:
| Q |
30 |
aagggaacatagagtggtttacacagaacactggctttatgtttgagcaagcaccttatttcaatgcccttttggtttttattgaggt |
117 |
Q |
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||||| ||||| | ||||| |||| ||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||| |
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| T |
42748791 |
aaggggacatacaatggttcgcacaaaacactggctttatgttcgaaatagcaccctatttcaatgccattttggtttttattgaggt |
42748704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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