View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_high_14 (Length: 414)
Name: NF1368_high_14
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 17610241 - 17610602
Alignment:
| Q |
13 |
aatattgtatgagcaagccttgccaggacaaaaccacaaataaaaacgttttgaatgcatgccaatgtacgaaaatgttaaaagaaaatcattttgacct |
112 |
Q |
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| T |
17610241 |
aatattgtatgagtaagccttgccaggacaaaaccacaaataaaaacgttttgaatgcatgccaatgt----------taaaagaaaatcattttgacct |
17610330 |
T |
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| Q |
113 |
atcatttaatatcattaattcattctctcttgaaannnnnnnaattatgtgtgtccaagtaaatatttcttgcctcnnnnnnntatttacatttaaattg |
212 |
Q |
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| T |
17610331 |
atcatttaatatcattaattcattctctctttaaaattttttaattatgtgtgtccaagtaaatatttcttgcctcaaaaaaatatttacatttgaattg |
17610430 |
T |
|
| Q |
213 |
tattgatggtgaagtgagaaaaaataattagataatttactggtgatattagtttattcaacggtacaacactttacnnnnnnnnngttgaagaaagaca |
312 |
Q |
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| T |
17610431 |
tattgatggtgaagtgagaaaaaataattagagcatttactggtgatattagtttattctacggtagaacactttac-ttttttttgttgaagaaagaca |
17610529 |
T |
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| Q |
313 |
tataatagaagaacaattacacagaagtgtcaatatactattaatatactatatcattattgcaatattagtg |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17610530 |
tataatagaagaacaattacacagaagtgtcaatatactattaatatactatatcattattgcaatattagtg |
17610602 |
T |
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