View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_high_18 (Length: 391)
Name: NF1368_high_18
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 8525494 - 8525679
Alignment:
| Q |
28 |
catcgcaacataaataattgttaatatttctattggaatctatggccggagaatgtcgatccacaaatgaaatatattgtagagtcatcttaagannnnn |
127 |
Q |
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| T |
8525494 |
catcgcaacataaataattgttaatatttctattggaatctatggctcgagaatgtcgatgcacaattgaaatatattgtagagtcatcttaagattttt |
8525593 |
T |
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| Q |
128 |
nnnncatattattacacacctgaatgtatatttgtagaatgatcgtgaattcaatgaatgtataatcttaatataattgaatatac |
213 |
Q |
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| T |
8525594 |
ttttcatattattacacacctgaatgtatatgtgtagaatgatcgtgaattcaatgaatgtataatcttcatacaattgaagatac |
8525679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 8525685 - 8525773
Alignment:
| Q |
250 |
tacaattgttcctcatctgttgactaggaagctgcagtgtgattatat------acttggaagtattgattgacaggtttgaattgttc |
332 |
Q |
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| T |
8525685 |
tacaatcgttcctcatctattgactaggaagctgcagtgtgattatatacattgacttgaaagtattgattgacaggtttgaattgttc |
8525773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 12251750 - 12251787
Alignment:
| Q |
156 |
tatttgtagaatgatcgtgaattcaatgaatgtataat |
193 |
Q |
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| T |
12251750 |
tatttgtagactgatcgtgaattcaatgaaggtataat |
12251787 |
T |
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