View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1368_high_21 (Length: 374)
Name: NF1368_high_21
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 36563713 - 36564050
Alignment:
| Q |
30 |
acattgacaagaaattaaatgtttatagtcatacctagaagaaacaataaaaaccacatacaaactggtcattaaaaactccaaccaaactttccttgcg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36563713 |
acattgacaagaaattaaatgtttatagtcatacctagaagaaacaataaaaaccacatacaaactggtcattaaaaactccaaccaaactttccttgcg |
36563812 |
T |
|
| Q |
130 |
cattaatcacatttaactaaccttgaacaactactatatatacatatattaaaccttctgtgtaagccagaatagcttctccaaaagagttaaaataaaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36563813 |
cattaatcacatttaactaaccttgaacaactactatatatacatatattaaaccttctgtgtaagccagaatagcttctccaaaagagttaaaataaaa |
36563912 |
T |
|
| Q |
230 |
atagtacataatattattacttcattattatcatgaggcttatatgcatatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36563913 |
atagtacataatattattacttcattattatcatgaggcttatatgcatatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaa |
36564012 |
T |
|
| Q |
330 |
gactaaaaatcatgtaccagcagtaattgtctgtggtg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36564013 |
gactaaaaatcatgtaccagcagtaattgtctttggtg |
36564050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 359
Target Start/End: Original strand, 36576588 - 36576671
Alignment:
| Q |
276 |
catatgcatagcatggttaatattgataacccaaattatcatggtgacttgcaagactaaaaatcatgtaccagcagtaattgt |
359 |
Q |
| |
|
||||||||| | |||| ||||||||||||| ||||| ||||||||||||||||| | | ||||| ||||||||||||||||||| |
|
|
| T |
36576588 |
catatgcatcgtatggctaatattgataactcaaatgatcatggtgacttgcaataatgaaaattatgtaccagcagtaattgt |
36576671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University