View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1368_high_28 (Length: 345)

Name: NF1368_high_28
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1368_high_28
NF1368_high_28
[»] chr2 (3 HSPs)
chr2 (186-335)||(13486066-13486215)
chr2 (28-158)||(13485905-13486036)
chr2 (28-158)||(13492344-13492476)
[»] chr8 (2 HSPs)
chr8 (224-332)||(14958086-14958195)
chr8 (254-307)||(9293239-9293293)
[»] chr6 (3 HSPs)
chr6 (230-314)||(12155378-12155461)
chr6 (242-331)||(33908575-33908665)
chr6 (227-324)||(9627123-9627221)
[»] chr7 (1 HSPs)
chr7 (232-291)||(15077096-15077156)
[»] chr3 (2 HSPs)
chr3 (254-313)||(11630110-11630170)
chr3 (254-332)||(8543101-8543181)
[»] chr5 (3 HSPs)
chr5 (254-314)||(7237076-7237137)
chr5 (233-332)||(38755695-38755792)
chr5 (242-294)||(41715151-41715204)
[»] chr1 (3 HSPs)
chr1 (230-314)||(7440921-7441006)
chr1 (254-307)||(6397666-6397720)
chr1 (242-290)||(28666886-28666935)


Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 186 - 335
Target Start/End: Original strand, 13486066 - 13486215
Alignment:
Q  186 ttgtatgcaactatttatacgtggctttcgaattttaaggttattgttagaacgaaaactagtaactgaagattaaataagagaacgaaagaaaaaacaa 285  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13486066 ttgtatgcaactatttatatgtggctttcgaattttaaggttattgttagaacgaaaactaataactgaagattaaataagagaacgaaagaaaaaacaa 13486165  T
Q  286 tgaacatacaatattttttaacacagttcaatcaattgtacctacctatg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13486166 tgaacatacaatattttttaacacagttcaatcaattgtacctacctatg 13486215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 13485905 - 13486036
Alignment:
Q  28 cattttattatatcatgtgggcttgatttggttgccaaatgtaattttctattt-ccgtttgctgaagtttgagattgtaagtcatatgtgtacctccct 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13485905 cattttattatatcatgtgggcttgatttggttgccaaatgtaattttctattttccgtttgctgaagtttgagattgtaagtcatatgtgtacctccct 13486004  T
Q  127 tcaagaaattataataatacttcatctattca 158  Q
    ||||||||||||||||||||||||||||||||    
T  13486005 tcaagaaattataataatacttcatctattca 13486036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 13492344 - 13492476
Alignment:
Q  28 cattttattatatcatgtgggcttgatttggttgccaaatgtaattttctatttccgtttgctgaagtttgagattgtaagtc--atatgtgtacctccc 125  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||  ||||||||||||||     
T  13492344 cattttattatatcatgtgggcttgatttggttgacaaatgtaattttctattttcttttgctgaagtttgagattgtaagtcatatatgtgtacctcct 13492443  T
Q  126 ttcaagaaattataataatacttcatctattca 158  Q
    ||||| |||||||||||||||||||||||||||    
T  13492444 ttcaataaattataataatacttcatctattca 13492476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 224 - 332
Target Start/End: Complemental strand, 14958195 - 14958086
Alignment:
Q  224 ggttattgttagaacgaaaactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaacatacaatattttttaacacagttcaatcaatt 322  Q
    ||||||||||||||| | ||||||||||  ||||||||| ||||||||||||||  || ||||||||||||  |||||| ||||||||||||   |||||    
T  14958195 ggttattgttagaacaacaactagtaacaaaagattaaacaagagaacgaaagaggaagacaatgaacataggatatttgttaacacagttcggccaatt 14958096  T
Q  323 gtacctacct 332  Q
    || |||||||    
T  14958095 gtgcctacct 14958086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 9293239 - 9293293
Alignment:
Q  254 aagattaaataagagaacgaaaga-aaaaacaatgaacatacaatattttttaac 307  Q
    |||||||||||||||||| ||||| ||| |||||||||| ||||||||| |||||    
T  9293239 aagattaaataagagaacaaaagagaaagacaatgaacacacaatatttgttaac 9293293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 12155378 - 12155461
Alignment:
Q  230 tgttagaacgaaaactagtaactgaagattaaataagagaacgaaagaaaaa-acaatgaacatacaatattttttaacacagttc 314  Q
    ||||||||| | ||||||||||  || ||||  ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  12155378 tgttagaacaacaactagtaacaaaaaatta--taagagaacgaaagagaaagacaatgaacacacaatattttttaacacagttc 12155461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 33908575 - 33908665
Alignment:
Q  242 aactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaacatacaatattttttaacacagttcaatcaattgtacctacc 331  Q
    ||||||||||  || ||||||||||||||||||||| ||| |||||||||| |  |||||| ||||| |||||| | ||||||| ||||||    
T  33908575 aactagtaacaaaatattaaataagagaacgaaagagaaagacaatgaacacatgatatttgttaacgcagttcgaccaattgtgcctacc 33908665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 9627123 - 9627221
Alignment:
Q  227 tattgttagaacgaaaactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaacatacaatattttttaacacagttcaatcaattgt 324  Q
    |||| ||||||| | |||||| |||  ||||||||||||||||| |||||| ||| |||||||||| |  |||||| ||||| |||||||  |||||||    
T  9627123 tatttttagaacaacaactagaaacaaaagattaaataagagaatgaaagagaaacacaatgaacacatgatatttgttaacccagttcagccaattgt 9627221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 15077096 - 15077156
Alignment:
Q  232 ttagaacgaaaactagtaactgaagattaaataagagaacgaaag-aaaaaacaatgaaca 291  Q
    ||||||||| ||||||||||   |||||||||||||||||||||| |||||||||||||||    
T  15077096 ttagaacgacaactagtaacaacagattaaataagagaacgaaagtaaaaaacaatgaaca 15077156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 11630170 - 11630110
Alignment:
Q  254 aagattaaataagagaacgaaagaaaaa-acaatgaacatacaatattttttaacacagtt 313  Q
    |||||||||||||||||| ||||||||| ||||||| ||||| |||||| |||||||||||    
T  11630170 aagattaaataagagaacaaaagaaaaagacaatgatcatacgatatttgttaacacagtt 11630110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 8543181 - 8543101
Alignment:
Q  254 aagattaaataagagaacgaaagaaaaaa--caatgaacatacaatattttttaacacagttcaatcaattgtacctacct 332  Q
    |||||||||||||||||||||  || |||  |||||||||||| |||||| ||||| ||||||   ||||||| |||||||    
T  8543181 aagattaaataagagaacgaagaaagaaagacaatgaacatacgatatttgttaacgcagttcggccaattgtgcctacct 8543101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 7237076 - 7237137
Alignment:
Q  254 aagattaaataagagaacgaaagaaaaa-acaatgaacatacaatattttttaacacagttc 314  Q
    |||||||||||||||||||||||||||| |||||||||| || |||||| ||| | ||||||    
T  7237076 aagattaaataagagaacgaaagaaaaagacaatgaacacacgatatttgttaccgcagttc 7237137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 332
Target Start/End: Complemental strand, 38755792 - 38755695
Alignment:
Q  233 tagaacgaaaactagtaactgaagattaaataagagaacgaaagaaaaaacaatgaacatacaatattttttaacacagttcaatcaattgtacctacct 332  Q
    |||||| | ||||||||||  |||||||||||||||||||||||| |||   ||||||| || |||||| |||| ||||||   |||||||| |||||||    
T  38755792 tagaacaacaactagtaacaaaagattaaataagagaacgaaagagaaa--gatgaacacaccatatttgttaatacagtttggtcaattgtgcctacct 38755695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 41715204 - 41715151
Alignment:
Q  242 aactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaacatac 294  Q
    ||||||||||  |||||||||||||||||||||||| ||| ||||| |||||||    
T  41715204 aactagtaacaaaagattaaataagagaacgaaagagaaagacaattaacatac 41715151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 7441006 - 7440921
Alignment:
Q  230 tgttagaacgaaaactagtaactgaagattaaataagagaacgaaag-aaaaaacaatgaacatacaatattttttaacacagttc 314  Q
    ||||||||| | | ||||||||  ||||||||||||||||||||||| ||||||||||  | |||| |||||| ||||| ||||||    
T  7441006 tgttagaacaacatctagtaacataagattaaataagagaacgaaagtaaaaaacaatatatatacgatatttgttaacgcagttc 7440921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 6397666 - 6397720
Alignment:
Q  254 aagattaaataagagaacgaaag-aaaaaacaatgaacatacaatattttttaac 307  Q
    |||||||||||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  6397666 aagattaaataagagaaccaaagtaaaacacaacgaacatacaatatttgttaac 6397720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 28666935 - 28666886
Alignment:
Q  242 aactagtaactgaagattaaataagagaacgaaaga-aaaaacaatgaac 290  Q
    ||||||||||  |||||||||||||||||||||||| ||| |||||||||    
T  28666935 aactagtaacaaaagattaaataagagaacgaaagagaaagacaatgaac 28666886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University