View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1368_high_32 (Length: 320)

Name: NF1368_high_32
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1368_high_32
NF1368_high_32
[»] chr4 (5 HSPs)
chr4 (32-266)||(25657849-25658082)
chr4 (138-236)||(1470468-1470567)
chr4 (138-227)||(6936100-6936190)
chr4 (141-212)||(43610034-43610106)
chr4 (162-227)||(31598696-31598761)
[»] chr7 (1 HSPs)
chr7 (133-237)||(20904340-20904445)
[»] chr2 (3 HSPs)
chr2 (133-234)||(10991079-10991181)
chr2 (100-236)||(26831851-26831988)
chr2 (133-236)||(30939046-30939150)
[»] chr1 (1 HSPs)
chr1 (174-225)||(25141309-25141360)
[»] chr6 (1 HSPs)
chr6 (165-236)||(31177968-31178039)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 32 - 266
Target Start/End: Original strand, 25657849 - 25658082
Alignment:
Q  32 aatatcttcaagggataaagaactatttgcacaatttacacaacttaactcatgatgnnnnnnnngtttgtctatgatctgtaatttagaacgataactt 131  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||||||    
T  25657849 aatatcttcaagggataaacagctatttgcacaatttacacaacttaactcatgatgttttttt-gtttgtctatgatctgtaattcagaacgataactt 25657947  T
Q  132 aagagaaagtaaaaccaatacaccaactatatcagtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 231  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25657948 aagagaaagtaaaaccaatacaccaactatattagtcacaagcaacaagactacataatttttcataattcattaacattaaatcaattcgacatttcgt 25658047  T
Q  232 taacaacttaacactacacaactccccatttcttc 266  Q
    |||||||||||||| |||||||||||| |||||||    
T  25658048 taacaacttaacaccacacaactccccctttcttc 25658082  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 1470567 - 1470468
Alignment:
Q  138 aagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgttaaca 236  Q
    ||||||| | ||||||||||||||| || |||| | | ||||||| ||| |||| | ||||||||||||||||||||||||||||||||||  |||||||    
T  1470567 aagtaaaccgaatacaccaactataccaagtcatagataacaacattacctaatctttcataattcattaacattaaatcaattcgacattaagttaaca 1470468  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 6936100 - 6936190
Alignment:
Q  138 aagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatt 227  Q
    |||||||| ||||||| ||| |||| || |||| ||||||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||    
T  6936100 aagtaaaatcaatacatcaattataccaagtcataaacaacaacattacataatttttcatgattcattaatattaaatcaattcggcatt 6936190  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 43610106 - 43610034
Alignment:
Q  141 taaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacatta 212  Q
    ||||||||||||| |||||||| || |||| ||||||||||| | |||||||| |||| ||||||| ||||||    
T  43610106 taaaaccaatacatcaactataccaagtcataaacaacaacactccataatttgtcatgattcatttacatta 43610034  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 31598696 - 31598761
Alignment:
Q  162 atcagtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatt 227  Q
    |||||||| |||||| |||| |||||||| | ||| |||| || || |||||||||||||||||||    
T  31598696 atcagtcataaacaagaacaatacataatctttcacaattgatcaaaattaaatcaattcgacatt 31598761  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 20904340 - 20904445
Alignment:
Q  133 agagaaagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 231  Q
    |||| ||| |||||||||||||||||||||||| |||| ||   |||||| | |||||||| |||||||||||||||||||||||||||||||||| |||    
T  20904340 agaggaagaaaaaccaatacaccaactatatcaagtcataagttacaacattgcataatttttcataattcattaacattaaatcaattcgacattacgt 20904439  T
Q  232 taacaa 237  Q
    ||||||    
T  20904440 taacaa 20904445  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 10991181 - 10991079
Alignment:
Q  133 agagaaagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 231  Q
    |||| |||||||| |||||||||||||||| || |||| || | | |||| |||||||||| ||||||||||||||||||||||||  |||||||| |||    
T  10991181 agaggaagtaaaaacaatacaccaactataccaagtcataagctataacattacataatttttcataattcattaacattaaatcagctcgacattgcgt 10991082  T
Q  232 taa 234  Q
    |||    
T  10991081 taa 10991079  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 26831851 - 26831988
Alignment:
Q  100 tgtctatgatctgtaatttagaacgataacttaagagaaagtaaaaccaatacaccaactatatc-agtcacaaacaacaacagtacataatttctcata 198  Q
    ||||||||| |||||||| | ||||| || || |||| ||||| |||||||||||||| ||||   ||||| || |||||||| |||||||| | |||||    
T  26831851 tgtctatgacctgtaattcaaaacgacaatttcagaggaagtacaaccaatacaccaagtatacagagtcataagcaacaacattacataatctttcata 26831950  T
Q  199 attcattaacattaaatcaattcgacatttcgttaaca 236  Q
    ||||| ||||||||||| | ||| ||||| ||||||||    
T  26831951 attcaataacattaaattagttcaacattacgttaaca 26831988  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 30939150 - 30939046
Alignment:
Q  133 agagaaagtaaaaccaatacaccaactatatca-gtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgt 231  Q
    |||| |||||||| |||||||| ||||||| || |||| || |||| ||| || ||||| | ||||||||||||| ||||||||||||| |||||| |||    
T  30939150 agaggaagtaaaatcaatacactaactataccaagtcataagcaaccacattatataatctatcataattcattagcattaaatcaatttgacattacgt 30939051  T
Q  232 taaca 236  Q
    |||||    
T  30939050 taaca 30939046  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 25141360 - 25141309
Alignment:
Q  174 caacaacagtacataatttctcataattcattaacattaaatcaattcgaca 225  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  25141360 caacaacactacataatttttcataattcattaacattaaatcaattcgaca 25141309  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 31178039 - 31177968
Alignment:
Q  165 agtcacaaacaacaacagtacataatttctcataattcattaacattaaatcaattcgacatttcgttaaca 236  Q
    ||||| |||||| |||  |||||||||| |||  ||||||||||||||||||||||| ||||| ||| ||||    
T  31178039 agtcataaacaataacgttacataatttttcaagattcattaacattaaatcaattcaacattacgtgaaca 31177968  T

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