View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1368_high_4 (Length: 513)

Name: NF1368_high_4
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1368_high_4
NF1368_high_4
[»] chr4 (12 HSPs)
chr4 (141-505)||(29551898-29552271)
chr4 (194-328)||(7631081-7631215)
chr4 (194-319)||(37397103-37397228)
chr4 (297-486)||(49606446-49606635)
chr4 (357-496)||(36072232-36072371)
chr4 (359-489)||(23185931-23186064)
chr4 (197-462)||(6369355-6369620)
chr4 (359-402)||(53638676-53638719)
chr4 (363-410)||(55398867-55398914)
chr4 (399-505)||(3510529-3510635)
chr4 (355-505)||(18905415-18905565)
chr4 (360-404)||(12692625-12692669)
[»] chr3 (6 HSPs)
chr3 (340-502)||(27036317-27036479)
chr3 (340-502)||(27025076-27025238)
chr3 (392-505)||(3162716-3162829)
chr3 (297-425)||(46282017-46282146)
chr3 (340-399)||(51135472-51135531)
chr3 (369-505)||(29788334-29788470)
[»] chr5 (8 HSPs)
chr5 (290-490)||(32695670-32695870)
chr5 (197-404)||(36519638-36519845)
chr5 (359-502)||(22910051-22910194)
chr5 (297-400)||(27689097-27689200)
chr5 (297-500)||(15812370-15812570)
chr5 (297-437)||(22416394-22416535)
chr5 (340-432)||(27486677-27486769)
chr5 (340-407)||(41615126-41615193)
[»] chr2 (11 HSPs)
chr2 (359-505)||(25630649-25630795)
chr2 (375-498)||(33946160-33946283)
chr2 (393-498)||(41255466-41255571)
chr2 (340-413)||(32475472-32475545)
chr2 (467-504)||(42014775-42014812)
chr2 (297-501)||(37126609-37126813)
chr2 (446-502)||(2734575-2734631)
chr2 (385-505)||(22437020-22437140)
chr2 (340-406)||(18964633-18964699)
chr2 (458-503)||(38113987-38114032)
chr2 (331-407)||(42014857-42014932)
[»] chr8 (4 HSPs)
chr8 (283-505)||(16796118-16796340)
chr8 (385-505)||(20657373-20657493)
chr8 (360-422)||(21446197-21446259)
chr8 (369-422)||(32108995-32109048)
[»] chr1 (10 HSPs)
chr1 (355-505)||(15248330-15248480)
chr1 (292-432)||(48181297-48181437)
chr1 (340-403)||(43074990-43075053)
chr1 (290-498)||(28638796-28639004)
chr1 (454-505)||(15499932-15499983)
chr1 (299-498)||(34550399-34550598)
chr1 (354-443)||(19440715-19440804)
chr1 (441-505)||(7563225-7563289)
chr1 (331-407)||(30517100-30517176)
chr1 (367-407)||(43074870-43074910)
[»] scaffold0001 (1 HSPs)
scaffold0001 (315-498)||(425960-426143)
[»] scaffold0048 (2 HSPs)
scaffold0048 (297-407)||(54897-55007)
scaffold0048 (359-417)||(87027-87085)
[»] scaffold0294 (1 HSPs)
scaffold0294 (371-498)||(1011-1135)
[»] chr7 (4 HSPs)
chr7 (340-505)||(1905720-1905885)
chr7 (357-452)||(18043974-18044066)
chr7 (340-404)||(1378728-1378792)
chr7 (340-432)||(25531337-25531429)
[»] chr6 (6 HSPs)
chr6 (340-505)||(20386746-20386911)
chr6 (359-407)||(17521054-17521102)
chr6 (367-423)||(25173013-25173069)
chr6 (342-422)||(33680813-33680893)
chr6 (282-404)||(19626546-19626668)
chr6 (446-498)||(17521122-17521174)
[»] scaffold0210 (1 HSPs)
scaffold0210 (362-502)||(6936-7076)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 141 - 505
Target Start/End: Complemental strand, 29552271 - 29551898
Alignment:
Q  141 tttttggtacaaaagtataacaatttcaaatacatcatagatgtgatttaacaacataa---------taaaataaaacataacagattattgatcagct 231  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||||||||    
T  29552271 ttttgggtacaaaggtataacaatttcaaatacatcatagatgtgatttaacaacgtaaaacatgtaataaaataaaacataacagattattgatcagct 29552172  T
Q  232 caattaagttcttcatctggttcctcgagtagaaccctaatatcttcattgttcctaagccagagcaaacttttctgattttcttcaataaatctgaata 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29552171 caattaagttcttcatctggttcctcgagtagaaccctaatatcttcattgttcctaagccggagcaaacttttctgattttcttcaataaatctgaata 29552072  T
Q  332 atgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaa 431  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  29552071 atgaagactccaactcgattgttcctttagtactgtactgaccaaatatcgagaacatggttctcacgtcgtcgtcattcatgagcatcatctgattgaa 29551972  T
Q  432 ctgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtctctgtggt 505  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29551971 ctgcactcttccggctgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtctctgtggt 29551898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 7631215 - 7631081
Alignment:
Q  194 acataataaaataaaacataacagattattgatcagctcaattaagttcttcatctggttcctcgagtagaaccctaatatcttcattgttcctaagcca 293  Q
    ||||||||||||||||||||||| || || |||||||| |||||| |||||| | ||||||||  |||||| | ||||| ||||||| |||  | || |     
T  7631215 acataataaaataaaacataacatatcatggatcagctaaattaacttcttcgtatggttcctttagtagagctctaatctcttcatagtttttgagtcg 7631116  T
Q  294 gagcaaacttttctgattttcttcaataaatctga 328  Q
    || ||||||||||||| ||||||||| | ||||||    
T  7631115 gaacaaacttttctgaatttcttcaacatatctga 7631081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 37397228 - 37397103
Alignment:
Q  194 acataataaaataaaacataacagattattgatcagctcaattaagttcttcatctggttcctcgagtagaaccctaatatcttcattgttcctaagcca 293  Q
    |||||||||||||||||||||||||| || ||||| || |||||| || ||| ||| ||||||  || ||| |||| || ||||||  |||||| | |||    
T  37397228 acataataaaataaaacataacagatcatggatcaactaaattaacttattcgtcttgttccttaagcagagccctgatctcttcacagttcctgaacca 37397129  T
Q  294 gagcaaacttttctgattttcttcaa 319  Q
    || ||||||||||||| |||||||||    
T  37397128 gaacaaacttttctgaatttcttcaa 37397103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 486
Target Start/End: Original strand, 49606446 - 49606635
Alignment:
Q  297 caaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctc 396  Q
    ||||||||| ||| ||| ||||| | ||||||  || ||||  ||||||||||| |  | | ||||| |||| |||||||| ||| | ||||||||||||    
T  49606446 caaacttttttgaatttgttcaacagatctgaccaacgaagtgtccaactcgatcgaccctctagtattgtattgaccaaagatcgagaacatggttctc 49606545  T
Q  397 acgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccacc 486  Q
    ||||||||||||||| | ||| ||||| |  ||||| |||  || ||||||||||| ||| ||||  |  ||||||||||||||||||||    
T  49606546 acgtcgtcgtcattcataagcttcatccggctgaaccgcatactcccgactgagtcggtcgatggttgtcgatactcaacaccatccacc 49606635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 357 - 496
Target Start/End: Original strand, 36072232 - 36072371
Alignment:
Q  357 tttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtc 456  Q
    ||||||| ||||  ||||||||||| |||||||||||||| | |||||||| ||| ||||  |||| ||| ||| ||||||||||||||| ||||   ||    
T  36072232 tttagtattgtatggaccaaatatcgaaaacatggttctcgcatcgtcgtcgttcttgagtttcatatgactgagctgcactcttccgaccgagttgatc 36072331  T
Q  457 aatggacgaagatactcaacaccatccaccctccttgtgt 496  Q
     |||||||  ||||||||||||  |||| ||||| |||||    
T  36072332 gatggacgttgatactcaacactttccatcctccctgtgt 36072371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 489
Target Start/End: Original strand, 23185931 - 23186064
Alignment:
Q  359 tagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtca---ttcctgagcatcatctgattgaactgcactcttccgactgagtcagt 455  Q
    |||||||||||||| |||| ||| | ||||||||||| ||||||||||||   |||  |||| |||||||  |||||||||| || || |||||||| ||    
T  23185931 tagtactgtactgatcaaagatcgagaacatggttctaacgtcgtcgtcatcgttcacgagcttcatctggctgaactgcacactcccaactgagtcggt 23186030  T
Q  456 caatggacgaagatactcaacaccatccaccctc 489  Q
      | |||||   ||||||||||||||||||||||    
T  23186031 ggacggacgtcaatactcaacaccatccaccctc 23186064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 462
Target Start/End: Complemental strand, 6369620 - 6369355
Alignment:
Q  197 taataaaataaaacataacagattattgatcagctcaattaagttcttcatctggttcctcgagtagaaccctaatatcttcattgttcctaagccagag 296  Q
    |||||||| |||||||||||| | |  ||||| || || ||| ||| || ||| ||||||| || ||| ||||| | ||||| |||||  || ||| ||     
T  6369620 taataaaacaaaacataacagttcacggatcatctaaactaatttcatcgtctagttcctccagcagagccctagtctcttcgttgtttataggccggat 6369521  T
Q  297 caaacttttctgattttcttcaataaatctgaataatgaagactccaactcgatt-gttcatttagtactgtactgaccaaatatctaaaacatggttct 395  Q
    ||||||||||||| ||  ||||| | ||||||  ||||||   | ||||||| |  |||| ||||||| ||||||| ||||||||  | ||||| |||||    
T  6369520 caaacttttctgaattaattcaacagatctgaccaatgaaacgttcaactcggtcagttc-tttagtattgtactgcccaaatatggagaacatagttct 6369422  T
Q  396 cacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatgga 462  Q
    ||||||||| || ||||||||| |||| ||  |  |||||||||||||  ||||||| ||| |||||    
T  6369421 cacgtcgtcatcgttcctgagcttcatttgggttgactgcactcttccagctgagtcggtcgatgga 6369355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 402
Target Start/End: Complemental strand, 53638719 - 53638676
Alignment:
Q  359 tagtactgtactgaccaaatatctaaaacatggttctcacgtcg 402  Q
    |||||||||||||||||||||| || | ||||||||||||||||    
T  53638719 tagtactgtactgaccaaatatttagatcatggttctcacgtcg 53638676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 55398914 - 55398867
Alignment:
Q  363 actgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcatt 410  Q
    ||||||||||||||||||  | ||||||||||||||||||| ||||||    
T  55398914 actgtactgaccaaatataaagaacatggttctcacgtcgttgtcatt 55398867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 505
Target Start/End: Original strand, 3510529 - 3510635
Alignment:
Q  399 gtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtct 498  Q
    ||||||||| ||| |||||||||||||  |||| || | ||| ||| |||| ||  || |||||||  ||||  ||||||| | ||||||||||||||||    
T  3510529 gtcgtcgtcgttcttgagcatcatctggctgaattgtaatctcccggctgattcgatcgatggacgtcgatatccaacaccgttcaccctccttgtgtct 3510628  T
Q  499 ctgtggt 505  Q
    |||||||    
T  3510629 ctgtggt 3510635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 505
Target Start/End: Original strand, 18905415 - 18905565
Alignment:
Q  355 catttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcag 454  Q
    ||||||||| ||| ||||| ||||||  |||||||| ||||||  | |||||| || |||| |||||| ||  ||||||| |  |||||  |||||||      
T  18905415 catttagtagtgtgctgactaaatattgaaaacatgattctcatattgtcgtcgttactgaacatcatttggatgaactggatgcttccatctgagtcga 18905514  T
Q  455 tcaatggacgaagatactcaacaccatccaccctccttgtgtctctgtggt 505  Q
    |  |||||||| |||||||||||   |||||| ||||||||||| ||||||    
T  18905515 ttgatggacgatgatactcaacaatgtccaccatccttgtgtctttgtggt 18905565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 12692669 - 12692625
Alignment:
Q  360 agtactgtactgaccaaatatctaaaacatggttctcacgtcgtc 404  Q
    |||||||||||||||||| ||| | ||||||||||||||| ||||    
T  12692669 agtactgtactgaccaaagatcgagaacatggttctcacgccgtc 12692625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 340 - 502
Target Start/End: Original strand, 27036317 - 27036479
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactc 439  Q
    ||||||| |||||| | | | ||||| ||||||| ||| ||| | ||||||||||||||||||||||| ||| ||||| ||||| || ||||| |||| |    
T  27036317 tccaacttgattgtccctcttgtactatactgacaaaagatcgagaacatggttctcacgtcgtcgtcgttcatgagcttcatccgactgaaccgcacac 27036416  T
Q  440 ttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtctctgt 502  Q
    |||| |||||||| ||| || ||||  ||||||||||||||| ||| |||| |||||||||||    
T  27036417 ttccaactgagtcggtcgatagacgccgatactcaacaccatacactctccgtgtgtctctgt 27036479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 502
Target Start/End: Original strand, 27025076 - 27025238
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactc 439  Q
    ||||||| |||||| | | | ||||| ||||||| ||| ||| | ||||||||||||||||||||||| ||| ||||| ||||| || ||||| |||| |    
T  27025076 tccaacttgattgtccctcttgtactatactgacaaaagatcgagaacatggttctcacgtcgtcgtcgttcatgagcttcatccgactgaaccgcacac 27025175  T
Q  440 ttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtctctgt 502  Q
    |||  |||||||| ||| || ||||  ||||||||||||||| ||| |||  |||||||||||    
T  27025176 ttctaactgagtcggtcgatagacgtcgatactcaacaccatacactctctgtgtgtctctgt 27025238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 505
Target Start/End: Original strand, 3162716 - 3162829
Alignment:
Q  392 ttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctcct 491  Q
    |||||||||||  ||| ||| | ||||||||||| |||||||| | ||||||| |||| ||| || ||| |||  ||||||||||||  |||||||||||    
T  3162716 ttctcacgtcgctgtcgttctttagcatcatctggttgaactggaatcttccggctgattcaatccatgaacgtcgatactcaacactgtccaccctcct 3162815  T
Q  492 tgtgtctctgtggt 505  Q
    ||||||| ||||||    
T  3162816 tgtgtctatgtggt 3162829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 46282146 - 46282017
Alignment:
Q  297 caaacttttctgattttcttcaataa-atctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttct 395  Q
    ||||||||||||| | ||||||| || || ||| ||| ||||  ||||||||||||| || ||| ||| ||||||||||||||||| | |||||| ||||    
T  46282146 caaacttttctgaatatcttcaaaaagatatgactaaggaagcatccaactcgattgctcctttggtattgtactgaccaaatatcgagaacatgattct 46282047  T
Q  396 cacgtcgtcgtcattcctgagcatcatctg 425  Q
    || ||| ||||  ||||| ||| |||||||    
T  46282046 catgtcatcgttgttcctaagcttcatctg 46282017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 51135531 - 51135472
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacg 399  Q
    ||||||||||||| || ||||| |||||||||||||| |||| | |||||||||||||||    
T  51135531 tccaactcgattggtcctttagaactgtactgaccaactatcaagaacatggttctcacg 51135472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 505
Target Start/End: Original strand, 29788334 - 29788470
Alignment:
Q  369 ctgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaaga 468  Q
    ||||||||||||| | |||||| | |||| ||||||||  ||  ||||||||||   | ||||||||| ||| | ||||| |||  || |||||||  ||    
T  29788334 ctgaccaaatatcaagaacatgctcctcatgtcgtcgttgttggtgagcatcattcaactgaactgcaatctcctgactgggtcgatcgatggacgttga 29788433  T
Q  469 tactcaacaccatccaccctccttgtgtctctgtggt 505  Q
    ||| ||||  | |||| ||||||||||||||||||||    
T  29788434 tacccaacgtcttccatcctccttgtgtctctgtggt 29788470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 290 - 490
Target Start/End: Original strand, 32695670 - 32695870
Alignment:
Q  290 gccagagcaaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacat 389  Q
    |||||| ||||||||||||| ||| ||||| | ||||||  ||  |||  ||||||||||| | || ||||||| ||||||||||||| ||| | ||||     
T  32695670 gccagatcaaacttttctgaatttgttcaacagatctgaccaacaaagcgtccaactcgatcggtcctttagtattgtactgaccaaagatcgagaacac 32695769  T
Q  390 ggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctc 489  Q
    | |||||||||||||||||||| ||||| ||| | |||||||| ||||  |  ||| |||||| ||| |||||||  |||||| |||||| |||||||||    
T  32695770 gattctcacgtcgtcgtcattcatgagcttcaaccgattgaaccgcacattctcgaatgagtcggtcgatggacgtcgatacttaacaccgtccaccctc 32695869  T
Q  490 c 490  Q
    |    
T  32695870 c 32695870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 404
Target Start/End: Complemental strand, 36519845 - 36519638
Alignment:
Q  197 taataaaataaaacataacagattattgatcagctcaattaagttcttcatctggttcctcgagtagaaccctaatatcttcattgttcctaagccagag 296  Q
    |||||||||||||||||| |||| |   ||||||| || ||| |||||| ||| ||||||| |||||| |||   | ||||| | ||||||| |   ||     
T  36519845 taataaaataaaacataatagatcacgaatcagctaaactaatttcttcgtctagttcctccagtagagcccagttctcttcgtagttcctaggttggat 36519746  T
Q  297 caaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctc 396  Q
    ||||||||||||| ||||||||| | || |||  || ||||  |||||||||||   || ||||||| ||||||||||||||||| | ||||||||||||    
T  36519745 caaacttttctgaatttcttcaacagatttgaccaacgaagcgtccaactcgatcagtcctttagtattgtactgaccaaatatcgagaacatggttctc 36519646  T
Q  397 acgtcgtc 404  Q
    || |||||    
T  36519645 acatcgtc 36519638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 502
Target Start/End: Complemental strand, 22910194 - 22910051
Alignment:
Q  359 tagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaa 458  Q
    |||||||| | |||||||| ||  | ||||||||||||||||||||||| ||| ||||| ||||| || ||| | ||||||| ||  ||||||  ||| |    
T  22910194 tagtactgaattgaccaaagatggagaacatggttctcacgtcgtcgtcgttcatgagcttcatccgagtgagccgcactctcccagctgagttggtcga 22910095  T
Q  459 tggacgaagatactcaacaccatccaccctccttgtgtctctgt 502  Q
       |||  |||||||||||||||||||||||| |||||||||||    
T  22910094 caaacgtcgatactcaacaccatccaccctccgtgtgtctctgt 22910051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 400
Target Start/End: Complemental strand, 27689200 - 27689097
Alignment:
Q  297 caaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctc 396  Q
    ||||||||||||| ||| ||||| ||||| ||  |||||||  ||||||| ||| | || | ||||||||||||||||||| ||| | ||||||||||||    
T  27689200 caaacttttctgaatttgttcaacaaatcagaccaatgaagcgtccaacttgatcggtcctatagtactgtactgaccaaagatcgagaacatggttctc 27689101  T
Q  397 acgt 400  Q
    ||||    
T  27689100 acgt 27689097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 500
Target Start/End: Complemental strand, 15812570 - 15812370
Alignment:
Q  297 caaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctc 396  Q
    ||||||||| ||| ||| ||||| | ||||||  || ||||  ||||||||||| | || | |||||||||| |||||||| ||| | || |||||||||    
T  15812570 caaacttttatgaatttgttcaacatatctgaccaacgaagcgtccaactcgatcggtcctctagtactgtattgaccaaagatcaagaatatggttctc 15812471  T
Q  397 acgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgt 496  Q
    |||||| ||   ||| | ||| ||||| |  ||||| |||| || | | |||||||  || ||||| |  |||||| ||||||||||||||||| |||||    
T  15812470 acgtcgccg---ttcataagcttcatccgggtgaaccgcacactcctggctgagtcgatcgatggatgtcgatactgaacaccatccaccctccgtgtgt 15812374  T
Q  497 ctct 500  Q
    ||||    
T  15812373 ctct 15812370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 22416535 - 22416394
Alignment:
Q  297 caaactttt-ctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttct 395  Q
    ||||||||| |||| ||||||||| | ||||||  || ||||  ||||||||||  | || ||||||||||||||||||| || |  | |||||||||||    
T  22416535 caaacttttgctgaatttcttcaacagatctgaccaacgaagcgtccaactcgaccggtcctttagtactgtactgaccacattttgagaacatggttct 22416436  T
Q  396 cacgtcgtcgtcattcctgagcatcatctgattgaactgcac 437  Q
    |||||| || || ||| ||||| ||||| || ||||| ||||    
T  22416435 cacgtcatcttcgttcttgagcttcatccgactgaaccgcac 22416394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 432
Target Start/End: Original strand, 27486677 - 27486769
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaac 432  Q
    ||||||||||| | ||||||| || |||||| |||||||||| | |||||||||| ||||| |||||  ||| ||| | ||||||| ||||||    
T  27486677 tccaactcgatcggtcatttaatattgtactaaccaaatatcgagaacatggttcccacgttgtcgttgttcgtgaacttcatctggttgaac 27486769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 407
Target Start/End: Complemental strand, 41615193 - 41615126
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtc 407  Q
    ||||||||||| | |||| ||||| ||| ||||||||| |   |||||||||||||||||||||||||    
T  41615193 tccaactcgatcggtcatctagtaatgtgctgaccaaagacagaaaacatggttctcacgtcgtcgtc 41615126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 359 - 505
Target Start/End: Complemental strand, 25630795 - 25630649
Alignment:
Q  359 tagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaa 458  Q
    ||||||||||||||||||| ||| | ||||||||| ||||| ||||||| ||  ||||| |||||  | |||||||||| |||||| ||||| | ||| |    
T  25630795 tagtactgtactgaccaaagatcgagaacatggttatcacgccgtcgtcgtttatgagcttcatccaactgaactgcacacttccggctgagccggtcga 25630696  T
Q  459 tggacgaagatactcaacaccatccaccctccttgtgtctctgtggt 505  Q
    |||||   ||||||||||||| |||||||||| || |||||||||||    
T  25630695 tggacattgatactcaacaccgtccaccctccgtgcgtctctgtggt 25630649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 375 - 498
Target Start/End: Original strand, 33946160 - 33946283
Alignment:
Q  375 aaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactca 474  Q
    ||||||| | |||||||||||||| |||||||| ||| ||||| ||||| |  ||||| |||| || ||||||||||||||| ||||||   ||||||||    
T  33946160 aaatatcgagaacatggttctcacatcgtcgtcgttcatgagcttcatccggctgaaccgcacactcccgactgagtcagtcgatggacatcgatactca 33946259  T
Q  475 acaccatccaccctccttgtgtct 498  Q
    |||| ||||||||||| |||||||    
T  33946260 acactatccaccctccgtgtgtct 33946283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 393 - 498
Target Start/End: Original strand, 41255466 - 41255571
Alignment:
Q  393 tctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctcctt 492  Q
    |||||| || ||||| ||| ||||  |||||||  ||||||||||||||||  ||||||| |||||||||||  |||||||||||| |||||||||||||    
T  41255466 tctcacatcatcgtcgttcatgagattcatctgggtgaactgcactcttccagctgagtcggtcaatggacgtcgatactcaacactatccaccctcctt 41255565  T
Q  493 gtgtct 498  Q
    ||||||    
T  41255566 gtgtct 41255571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 32475472 - 32475545
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcct 413  Q
    ||||||||||| | || ||||||| |||||| || ||||||| | ||||||||||||||||||||||| |||||    
T  32475472 tccaactcgatcggtcctttagtaatgtactaacaaaatatcgataacatggttctcacgtcgtcgtcgttcct 32475545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 504
Target Start/End: Complemental strand, 42014812 - 42014775
Alignment:
Q  467 gatactcaacaccatccaccctccttgtgtctctgtgg 504  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42014812 gatactcaacaccatccaccctccttgtgtctctgtgg 42014775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 501
Target Start/End: Complemental strand, 37126813 - 37126609
Alignment:
Q  297 caaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctc 396  Q
    ||||||||||||| ||| ||||| | || |||  || ||||  ||||||||||| |  | | |||||||||||| || ||| ||| | || |||||||||    
T  37126813 caaacttttctgaatttgttcaacagatgtgaccaacgaagcgtccaactcgatcgaccctctagtactgtactaactaaagatcgagaaaatggttctc 37126714  T
Q  397 acgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgt 496  Q
    ||||||||||| ||| ||||| ||||  |  ||||| |||| || | |  |||||  ||| || ||||  |||||||||||||||||||||||| ||| |    
T  37126713 acgtcgtcgtcgttcatgagcttcattcggctgaaccgcacactcctggatgagtaggtcgatagacgtcgatactcaacaccatccaccctccgtgttt 37126614  T
Q  497 ctctg 501  Q
    |||||    
T  37126613 ctctg 37126609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 2734575 - 2734631
Alignment:
Q  446 ctgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtctctgt 502  Q
    ||||||||||| ||||| |  |||||||||||||||||||||||  |||||||||||    
T  2734575 ctgagtcagtcgatggaggtcgatactcaacaccatccaccctctatgtgtctctgt 2734631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 505
Target Start/End: Original strand, 22437020 - 22437140
Alignment:
Q  385 aacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatcca 484  Q
    ||||||||||||||||||| ||| ||| ||||| ||||||   ||||||| || |||||   |||||||||  ||||| || |||||||||||   | ||    
T  22437020 aacatggttctcacgtcgttgtcgttcttgagcttcatcttggtgaactggacgcttccatatgagtcagttgatggaagacgatactcaacattgttca 22437119  T
Q  485 ccctccttgtgtctctgtggt 505  Q
    ||| |||||||||| ||||||    
T  22437120 cccaccttgtgtctttgtggt 22437140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 18964633 - 18964699
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgt 406  Q
    ||||||||||||  |||| ||||||||| ||||||||| |   | ||||||||||||||||||||||    
T  18964633 tccaactcgattagtcatctagtactgtgctgaccaaagacagagaacatggttctcacgtcgtcgt 18964699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 503
Target Start/End: Original strand, 38113987 - 38114032
Alignment:
Q  458 atggacgaagatactcaacaccatccaccctccttgtgtctctgtg 503  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||    
T  38113987 atggacgtagatactcaacaccctccaccttccttgtgtctttgtg 38114032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 42014932 - 42014857
Alignment:
Q  331 aatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtc 407  Q
    |||||||  ||||||||||| | || ||||||||||||||| ||||||||  | | ||||||||||||||| |||||    
T  42014932 aatgaagcgtccaactcgatcgatcctttagtactgtactg-ccaaatattgagatcatggttctcacgtcttcgtc 42014857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 283 - 505
Target Start/End: Complemental strand, 16796340 - 16796118
Alignment:
Q  283 ttcctaagccagagcaaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatct 382  Q
    |||||||||| || ||||||||| ||| ||||||||| | ||||||  || ||||  ||||||||||| |||  ||| |||| ||||||| |||| |||     
T  16796340 ttcctaagccggatcaaacttttatgaatttcttcaacagatctgaccaacgaagcgtccaactcgatcgttgcttttgtaccgtactgagcaaagatcg 16796241  T
Q  383 aaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatc 482  Q
    | |||||| |||||| || |||||| ||| ||||| |||||||| | ||| ||||  | ||  |||||||| |  |||||||   |||||||||||| ||    
T  16796240 agaacatgtttctcatgttgtcgtcgttcatgagcttcatctgacttaaccgcacagtccctgctgagtcaatagatggacgtcaatactcaacaccgtc 16796141  T
Q  483 caccctccttgtgtctctgtggt 505  Q
    |||||||||  ||||||||||||    
T  16796140 caccctcctcatgtctctgtggt 16796118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 505
Target Start/End: Complemental strand, 20657493 - 20657373
Alignment:
Q  385 aacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatcca 484  Q
    ||||||||||||||||||||||| ||| ||||| |||| ||  ||||||| || ||||   || |||| || ||||||||| |||| |||||||  ||||    
T  20657493 aacatggttctcacgtcgtcgtcgttcttgagcttcatttgggtgaactggacgcttcgatctaagtcggttaatggacgacgataatcaacactctcca 20657394  T
Q  485 ccctccttgtgtctctgtggt 505  Q
     ||||||||||||||||||||    
T  20657393 tcctccttgtgtctctgtggt 20657373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 422
Target Start/End: Original strand, 21446197 - 21446259
Alignment:
Q  360 agtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcat 422  Q
    |||||||||||||| ||||||| | ||||||||||||| ||| ||||| |||| |||| ||||    
T  21446197 agtactgtactgactaaatatcaagaacatggttctcatgtcttcgtcgttcccgagcttcat 21446259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 32108995 - 32109048
Alignment:
Q  369 ctgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcat 422  Q
    ||||||||||||| | |||||| | |||||||||||||| ||| ||||||||||    
T  32108995 ctgaccaaatatcgagaacatgctcctcacgtcgtcgtcgttcttgagcatcat 32109048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 505
Target Start/End: Original strand, 15248330 - 15248480
Alignment:
Q  355 catttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcag 454  Q
    |||||||||||| | || ||||||||| ||||||||||||||||||| | ||| ||| ||||| |||||||| | |||||||||  || || ||||        
T  15248330 catttagtactgcattggccaaatatcgaaaacatggttctcacgtcattgtcgttcatgagcttcatctgactaaactgcactactctgattgagctga 15248429  T
Q  455 tcaatggacgaagatactcaacaccatccaccctccttgtgtctctgtggt 505  Q
    |  ||||| |  ||||||||||| |||||||||||||||| ||||||||||    
T  15248430 ttgatggatgtcgatactcaacatcatccaccctccttgtatctctgtggt 15248480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 432
Target Start/End: Complemental strand, 48181437 - 48181297
Alignment:
Q  292 cagagcaaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatgg 391  Q
    |||| ||||||||||||| ||||||||||||||||||  |  | ||  ||||||||||| | || ||||||| |||||| |||||||||| | |||||||    
T  48181437 cagatcaaacttttctgaatttcttcaataaatctgacaaccgtagcgtccaactcgatcgatcctttagtattgtactaaccaaatatcgagaacatgg 48181338  T
Q  392 ttctcacgtcgtcgtcattcctgagcatcatctgattgaac 432  Q
    |||| ||||| ||| | ||||| ||| |||||  |||||||    
T  48181337 ttcttacgtcatcggcgttcctaagcttcatccaattgaac 48181297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 43074990 - 43075053
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgt 403  Q
    ||||||||||||| |||||| | ||| ||||||| ||||||| | |||||||||||||||||||    
T  43074990 tccaactcgattggtcatttcgaactatactgactaaatatcgagaacatggttctcacgtcgt 43075053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 498
Target Start/End: Complemental strand, 28639004 - 28638796
Alignment:
Q  290 gccagagcaaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacat 389  Q
    |||||| |||| |||| ||| ||||||||| | || |||  || ||||  ||||| ||||||| || ||||||||||||||  ||||| ||| |  | ||    
T  28639004 gccagatcaaatttttatgaatttcttcaacacatatgaccaacgaagcgtccaaatcgattggtcctttagtactgtacttgccaaagatcaatgagat 28638905  T
Q  390 ggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctc 489  Q
    |||| |||||||||| |  |||| |||  ||||  |  |||||  |||  ||||| ||||||| ||||||| |||   ||||| ||||||||||||||||    
T  28638904 ggttttcacgtcgtcattgttcccgagattcattcggctgaaccacacagttccggctgagtcggtcaatgtacgtcaatactgaacaccatccaccctc 28638805  T
Q  490 cttgtgtct 498  Q
    |||||||||    
T  28638804 cttgtgtct 28638796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 505
Target Start/End: Original strand, 15499932 - 15499983
Alignment:
Q  454 gtcaatggacgaagatactcaacaccatccaccctccttgtgtctctgtggt 505  Q
    |||||||||||  ||||||||||||| ||||||||||| |||||| ||||||    
T  15499932 gtcaatggacgtcgatactcaacaccgtccaccctcctagtgtctttgtggt 15499983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 498
Target Start/End: Original strand, 34550399 - 34550598
Alignment:
Q  299 aacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcac 398  Q
    ||||||| ||| ||| ||||| |||| |||  || ||||  ||||||||||||| || | ||||| |||| || ||||| ||  | ||||||||||||||    
T  34550399 aacttttttgaatttgttcaacaaatttgaccaacgaagcgtccaactcgattgatcctctagtattgtattggccaaagattgagaacatggttctcac 34550498  T
Q  399 gtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtct 498  Q
     |||||||| ||| ||||  ||||| |  | ||| |||| || | | ||||||| | |||||| ||  ||||||||||||| |||| ||||| |||||||    
T  34550499 atcgtcgtcgttcatgagattcatccggctaaaccgcacactccgggctgagtcggacaatgggcgtcgatactcaacaccgtccaacctccgtgtgtct 34550598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 19440804 - 19440715
Alignment:
Q  354 tcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttcc 443  Q
    ||||||||| |||||||||||||||||  | | |||  ||||||||| ||||||||| |||||| |||| ||  ||||||| || |||||    
T  19440804 tcatttagttctgtactgaccaaatattgagagcattattctcacgttgtcgtcatttctgagcttcatatgggtgaactggacgcttcc 19440715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 7563289 - 7563225
Alignment:
Q  441 tccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtctctgtggt 505  Q
    |||||||||||| | ||||||||   |||| ||||||||  |||||||||| |||||||||||||    
T  7563289 tccgactgagtcggacaatggacatcgatattcaacaccgaccaccctcctcgtgtctctgtggt 7563225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 407
Target Start/End: Complemental strand, 30517176 - 30517100
Alignment:
Q  331 aatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtc 407  Q
    |||||||  ||||||||||| | || | |||||||||| |||||||| |  || || ||||||||||||||||||||    
T  30517176 aatgaagcgtccaactcgatcgatcctctagtactgtattgaccaaagacatagaagatggttctcacgtcgtcgtc 30517100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 43074870 - 43074910
Alignment:
Q  367 tactgaccaaatatctaaaacatggttctcacgtcgtcgtc 407  Q
    ||||||| ||||||| | |||||||||||||||||||||||    
T  43074870 tactgactaaatatcaagaacatggttctcacgtcgtcgtc 43074910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 315 - 498
Target Start/End: Complemental strand, 426143 - 425960
Alignment:
Q  315 ttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctg 414  Q
    ||||| ||||||||  || ||||| ||||||||||| |  | |  |||||| |||| |||||| ||| | ||||||||||| || ||||| || ||| ||    
T  426143 ttcaacaaatctgaccaacgaagaatccaactcgatcgaccctccagtactttactaaccaaagatcgagaacatggttctaacttcgtcatcgttcatg 426044  T
Q  415 agcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtct 498  Q
    ||| ||||| |  ||||| |||| || |||||||||||| || | |||||  |||||||||||||||||||||||  |||||||    
T  426043 agcttcatccggctgaaccgcacactcccgactgagtcaatcgacggacgtcgatactcaacaccatccaccctctgtgtgtct 425960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 407
Target Start/End: Original strand, 54897 - 55007
Alignment:
Q  297 caaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctc 396  Q
    ||||||||||||| ||| ||||| | ||||||  |||||||  |||||||||||||  | | || |||||||||||||||| ||| | |||||||| |||    
T  54897 caaacttttctgaatttgttcaacatatctgaccaatgaagcgtccaactcgattgaccctctattactgtactgaccaaagatcaagaacatggtcctc 54996  T
Q  397 acgtcgtcgtc 407  Q
    |||||||||||    
T  54997 acgtcgtcgtc 55007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 87085 - 87027
Alignment:
Q  359 tagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagc 417  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||||    
T  87085 tagtactgtactgaccaaatatcaagaacatggttctcacgtcgtcgtcgttcatgagc 87027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 498
Target Start/End: Complemental strand, 1135 - 1011
Alignment:
Q  371 gaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatggacgaagata 470  Q
    ||||||||||| | |||||| | |||||||||||||   || |||||||||||||  ||||||||| ||| |||||||||||  ||||||||||  ||||    
T  1135 gaccaaatatcaagaacatgatcctcacgtcgtcgt---tcgtgagcatcatctggatgaactgcaatctcccgactgagtcgatcaatggacgtcgata 1039  T
Q  471 ctcaacaccatccaccctccttgtgtct 498  Q
    | |||||   |||||||| |||||||||    
T  1038 cccaacattgtccacccttcttgtgtct 1011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 505
Target Start/End: Complemental strand, 1905885 - 1905720
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactc 439  Q
    ||||||||||| | || | ||||| |||| |||||||| ||| | ||||||||| ||| || || ||| |||  || | |||||||  |||||  ||| |    
T  1905885 tccaactcgatcggtcctctagtattgtaatgaccaaagatcgagaacatggttatcatgttgttgtcgttcacgaacttcatctggctgaaccacacac 1905786  T
Q  440 ttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtctctgtggt 505  Q
    | | |||||||||  ||||||||||  ||||||||||||| |||||||||| ||||||||||||||    
T  1905785 tcctgactgagtcgatcaatggacgtcgatactcaacaccgtccaccctccgtgtgtctctgtggt 1905720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 452
Target Start/End: Original strand, 18043974 - 18044066
Alignment:
Q  357 tttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtc 452  Q
    ||||||| ||||||||| ||||||| | || |||||| |||||||||||   ||||||||| |||| ||  |||| ||||||||| ||||||||||    
T  18043974 tttagtattgtactgacaaaatatcgagaatatggttttcacgtcgtcg---ttcctgagcttcatttggctgaaatgcactctttcgactgagtc 18044066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 1378728 - 1378792
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtc 404  Q
    ||||||| ||||| || | ||||||||||||||||||| ||| | |||||||||||||| |||||    
T  1378728 tccaacttgattggtcctctagtactgtactgaccaaagatcgagaacatggttctcacctcgtc 1378792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 432
Target Start/End: Original strand, 25531337 - 25531429
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaac 432  Q
    |||||||||||  ||| || || | |||| |||||||||||| | ||||||||| | |||||||| || ||||||| | |||||||| |||||    
T  25531337 tccaactcgatccttccttcagcattgtattgaccaaatatcgagaacatggttatgacgtcgtcatcgttcctgaacttcatctgagtgaac 25531429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 505
Target Start/End: Complemental strand, 20386911 - 20386746
Alignment:
Q  340 tccaactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactc 439  Q
    ||||||||||| | || ||| ||| |||||| |||||| ||| | ||||||||||||||||||||||| || | |||  ||||| |   |||| ||||      
T  20386911 tccaactcgatcggtcctttggtaatgtactaaccaaagatcgagaacatggttctcacgtcgtcgtcgtttccgagattcatccggccgaaccgcacag 20386812  T
Q  440 ttccgactgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtctctgtggt 505  Q
    |||| |||||||||||| ||||||   ||||||||| | | ||||| |||||||||||||| ||||    
T  20386811 ttccaactgagtcagtcgatggacatcgatactcaagatcgtccactctccttgtgtctctatggt 20386746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 17521054 - 17521102
Alignment:
Q  359 tagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtc 407  Q
    |||||||||||||| |||| ||| | |||||||||||||||||||||||    
T  17521054 tagtactgtactgaacaaagatcgagaacatggttctcacgtcgtcgtc 17521102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 423
Target Start/End: Original strand, 25173013 - 25173069
Alignment:
Q  367 tactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatc 423  Q
    ||||||||||| ||| | ||||| ||||||||||||||||||||| ||||| |||||    
T  25173013 tactgaccaaagatcgagaacatcgttctcacgtcgtcgtcattcatgagcttcatc 25173069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 33680893 - 33680813
Alignment:
Q  342 caactcgattgttcatttagtactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcat 422  Q
    |||||| |||| || ||||||||| | ||||||||||||| | ||||||||| |||| || ||||||| ||||||| ||||    
T  33680893 caactcaattggtcctttagtactattctgaccaaatatcaataacatggttttcacatcatcgtcatccctgagcttcat 33680813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 404
Target Start/End: Original strand, 19626546 - 19626668
Alignment:
Q  282 gttcctaagccagagcaaacttttctgattttcttcaataaatctgaataatgaagactccaactcgattgttcatttagtactgtactgaccaaatatc 381  Q
    ||||||| ||| || ||||||||| ||| ||| ||||| | ||||||  || ||||  ||||||||||| |  | | ||||||||||| ||||||  |||    
T  19626546 gttcctaggccggatcaaacttttatgaatttgttcaacagatctgaccaacgaagcgtccaactcgatcgaccctctagtactgtacagaccaatgatc 19626645  T
Q  382 taaaacatggttctcacgtcgtc 404  Q
     | ||||||||||||||||||||    
T  19626646 gagaacatggttctcacgtcgtc 19626668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 498
Target Start/End: Original strand, 17521122 - 17521174
Alignment:
Q  446 ctgagtcagtcaatggacgaagatactcaacaccatccaccctccttgtgtct 498  Q
    |||| |||||| |||||||  |||||||||||| ||||||||||| |||||||    
T  17521122 ctgactcagtcgatggacgtcgatactcaacacaatccaccctccgtgtgtct 17521174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 502
Target Start/End: Complemental strand, 7076 - 6936
Alignment:
Q  362 tactgtactgaccaaatatctaaaacatggttctcacgtcgtcgtcattcctgagcatcatctgattgaactgcactcttccgactgagtcagtcaatgg 461  Q
    ||||||||| |||||| ||| | |||||||||||||| || ||||| ||| ||||| |||||    ||||| |||| || |||| |||||||||| |  |    
T  7076 tactgtactaaccaaagatcgagaacatggttctcacatcctcgtcgttcatgagcttcatccagatgaaccgcacactcccgattgagtcagtcgacag 6977  T
Q  462 acgaagatactcaacaccatccaccctccttgtgtctctgt 502  Q
    |||  ||||||||| || ||||||  |||  ||||||||||    
T  6976 acgtcgatactcaatacaatccacgatccgcgtgtctctgt 6936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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