View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_high_43 (Length: 272)
Name: NF1368_high_43
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_high_43 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 49871052 - 49871322
Alignment:
| Q |
1 |
gtcgattgttccgctaatagtgcagtcacggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccatccatttgacagttgtagaacaat |
100 |
Q |
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| T |
49871052 |
gtcgattgttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaat |
49871151 |
T |
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| Q |
101 |
gctttgtctgctgttacacggagggccactgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttca |
200 |
Q |
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| T |
49871152 |
gctttgtctgctgttacacggagggccactgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttca |
49871251 |
T |
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| Q |
201 |
cacctgtcaaattaataacaaatcgatcattacaacttacaacttaggaacagatgctaaatattaaacatt |
272 |
Q |
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| T |
49871252 |
cacctgtc-aattaataacaaatcgatcattacaacttacaacttaggaacagatgctaaatattaatcatt |
49871322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 49865119 - 49865334
Alignment:
| Q |
5 |
attgttccgctaatagtgcagtcacggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccatccatttgacagttgtagaacaatgctt |
104 |
Q |
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| T |
49865119 |
attgttccgctaatagtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctt |
49865218 |
T |
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| Q |
105 |
tgtctgctgttacacggagggccactgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacc |
204 |
Q |
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| T |
49865219 |
tgtctgctgttacacggagggccactgcttggtgctttgcggcaccggctgagttctcaaatccgacgttcaaggcggtgaaatgggcagagttcacacc |
49865318 |
T |
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| Q |
205 |
tgtcaaattaataacaa |
221 |
Q |
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| T |
49865319 |
tg-ccaattaataacaa |
49865334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 13960443 - 13960326
Alignment:
| Q |
21 |
tgcagtcacggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccatccatttgacagttgtagaacaatgctttgtctgctgttacacg |
120 |
Q |
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| T |
13960443 |
tgcagtcacggtagaattgacgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcg |
13960344 |
T |
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| Q |
121 |
gagggccactgcttgatg |
138 |
Q |
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| T |
13960343 |
gagtgcaactgcttgatg |
13960326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 13967606 - 13967491
Alignment:
| Q |
22 |
gcagtcacggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccatccatttgacagttgtagaacaatgctttgtctgctgttacacgg |
121 |
Q |
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| T |
13967606 |
gcagtcacggtagaattgacgttgggattggacgtagagtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcgg |
13967507 |
T |
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| Q |
122 |
agggccactgcttgat |
137 |
Q |
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| T |
13967506 |
agggcaactgcttgat |
13967491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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