View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1368_high_44 (Length: 272)

Name: NF1368_high_44

Description: NF1368

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1368_high_44

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 189; E-Value: 1e-102

Query Start/End: Original strand, 30 - 272

Target Start/End: Original strand, 34888685 - 34888943

Alignment:

Q	30	gacttttgattcagcaactcagacatctgcaaggaaagaaaaat---------------atgcacaaaaagaaacacatcaaattagacacccag-tttc	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	34888685	gacttttgattcagcaactcagacatctgcaaggaaagaaaaattagatatatgacaatatgcacaaaaagaaacacatcaaattagacacccagatttc	34888784	T

Q	114	ttaatcattgatatcttcccaactagtcaacttcttatataaccagggtttttaaaacaaaaatgttattagaatatgaatttgtgacaacaaaattcaa	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34888785	ttaatcattgatatctttcaaactagtcaacctcttatataaccagggtttttaaaacaaaaatgttattagaatatgaatttgtgacaacaaaattcaa	34888884	T

Q	214	caactttctttttgaatggttagcgcagttttcaaacatgtctaatgaagtggtagatt	272	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34888885	caactttctttttgaatggttagcgcagttttcaaacatgtctaatgaagtggtagatt	34888943	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2

Raw Score: 29; E-Value: 0.0000004

Query Start/End: Original strand, 163 - 218

Target Start/End: Original strand, 35483142 - 35483198

Alignment:

Q	163	ttttaaaac-aaaaatgttattagaatatgaatttgtgacaacaaaattcaacaact	218	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35483142	ttttaaaaccaaaaatgttatttgaacatctatttgggacaacaaaattcaacaact	35483198	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]