View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_high_5 (Length: 486)
Name: NF1368_high_5
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 30 - 473
Target Start/End: Original strand, 38736349 - 38736792
Alignment:
| Q |
30 |
ttagtattcctcaccaatttataattttaaactattttttataattaatttcaagtatatgcatataataaaatcataagagacatgtgatgacaatcta |
129 |
Q |
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| T |
38736349 |
ttagtattcctcaccaatttataattttaaactattttttataattaatttcaagtatatgcatataataaaatcataagagacatgtgatgacaatcta |
38736448 |
T |
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| Q |
130 |
tacccnnnnnnnntgtcacgacaatctatgtttttcttgacattaatacgacaaattctagagcggaacaacagggaagtatttaggtgatnnnnnnnnn |
229 |
Q |
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| T |
38736449 |
tccccaaaaaaaatgtcacgacaatctatgtttttcttgacattaatacgacaaattctagagcggaacaacagggaagtatttaggtgataaaaaaaaa |
38736548 |
T |
|
| Q |
230 |
-ttggacaataaaaatatacattatttaattactttaaaaatgcatatcatttgatttttctttctttcttgtgtacgtgccaaatagtgtagttaaatt |
328 |
Q |
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| T |
38736549 |
attggacaataaaaatatacattatttaattactttcaaaatgcatatcatttgatttttctttctttcttgtgtacgtaccaaatagtgtagttaaatt |
38736648 |
T |
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| Q |
329 |
ttgtgattatacaagactttcttgaaacaatcacatgtgtacatcatgtgcaattgaacggatgcttatattaaaagagttttcattattgtggtataaa |
428 |
Q |
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| T |
38736649 |
ttgtgattatacaagactttcttgaaacaatcacatgtgtacgtcatgtgcaattgaacggatgcttatattaaaagag-tttcattattatggtataaa |
38736747 |
T |
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| Q |
429 |
tgtcatatatacaacacattttccattgaccatctctttctatct |
473 |
Q |
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| T |
38736748 |
tgtcatatatacaacacattttccattgaccatctctttctatct |
38736792 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 4907348 - 4907399
Alignment:
| Q |
238 |
taaaaatatacattatttaattactttaaaaatgcatatcatttgatttttc |
289 |
Q |
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| T |
4907348 |
taaaaatatatatcatttaattattttaaaattgcatattatttgatttttc |
4907399 |
T |
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